mirror of
https://github.com/NicolasBohn/NexQuant.git
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f78175b37a
* refine ds modal for more cases: eval and es * update model template * prompts for model and ensemble * fix a bug * fix a bug * init: ds workflow evovingstrategy * Adding ensemble (#505) * Initial Draft * Updating logic for init * Revising * Successful Testing * Updating to use the latest & right class * bug: bug-fixing for testing * data science loop changes * data science loop base * ds loop feedback * fix * remove measure_time because it's duplicated (in LoopBase) * add the knowledge query for data_loader & feature * edit ds workflow evaluator * data_loader bug fix * stop evolving when all tasks completed * llm app change * fix break all complete strategy * Adding queried knowledge (#508) Co-authored-by: XianBW <36835909+XianBW@users.noreply.github.com> * fix loop bug * ds workflow evaluator; test; refine prompts * workflow spec * fix ci * feature task changes * ds loop change * fix a bug in feat * add query knowledge for model and workflow * llm_debug info(for show) using pickle instead of json * remove NextLoopException * loop change * coder raise CoderError when all sub_tasks failed * rename code_dict to file_dict in FBWorkspace * add CoSTEER unittest * now show self.version in Task.get_task_information(), simplify CoSTEER sub tasks definition * remove some properties in ModelTask, add model_type in it. * fix llm app bug * llm web app bug fix * ds loop bug fix * fix: give component code to feature&ens eval * loop catch error bug * rename load_from_raw_data to load_data * feat: Add debug data creation functionality for data science scenarios * support local folder (#511) * support local folder * remove unnecessary random * KaggleScen Subclass * small fix * use template for style description * update default scen to kaggle * update sample data script * make sure frac < 1 * fix a bug * feature spec changes * fix * changeimport order * clear unnecessary std outputs * fix a typo * create sample folder after unzip kaggle data * feature/model test script update * Align the data types across modules. * fix a bug in model eval * show line number * move sample entry point to app * spec & model prompt changes * Refine the competition specification to address the data type problem and the coherence issue. * fix some bugs * add file filter in FBworkspace.code property * support non-binary prediction * avoid too much warnings * fix a bug in ensemble module * filtered the knowledge query in all modules * delete RAG in idea proposal * refine the code in ensemble * show exp workspace in llm_st * exp_gen bug fix * feedback bug fix * use `feature` instead of `feat01` * Trace & method of judging if exp is completed change * fix a bug in package calling and execute ci * fix code * bug fix * bug fix * fix a bug * fix some bugs * fix a bug * refactor: Enhance error handling and feedback in data science loop * support different use_azure on chat and embedding models * multi-model proposal logic * fix a small syntax error * loopBase and some changes * ensemble scores change * fbworkspace.code -> .all_codes * use all model codes in workflow coder * check scores.csv's keys(model_names) * model name changes * add a todo in ensemble test * sota_exp changes * give model info in exp gen * add runner time limit * config using debug data or not in evals * exp to feedback base * add feature code when writing model task * small problem * copying during sampling * update * refactor: Simplify code handling and improve workspace management * model part output fix * print model's execution time * bug fix * ensemble test fix * ens small change * ens_test bug fix * Refine partial expansion logic to display only a few subfolders when their structure is uniform, improving readability in nested directories. * several update on prompts * sample subfolders * Filter the stdout after code execution to remove irrelevant information e.g. progress bars, whitespace characters, excessive line breaks. * Add some more prompts and comments * several update on the first init rounds * model timeout as error * fix pattern of getting model codes in workspace * small bux fix on model prompts * remove get_code_with_key since we have regex pattern * fix: Correct tqdm progress bar update logic in LoopBase class * feat: Add diff generation and enhance feedback mechanism in data science loop * update some fix to model and workflow prompts * refine the logic of progress bar filter * add last_successful_exp in exp_gen * fix a one line bug * add a hint in prompt * fix data sample for bms * fix data sample for bms * hypothesis small fix * crawler readme update * fix component gen * fix bug * annotation change * load description.md if it exists * refactor: Simplify SOTA description handling in feedback and prompts * refactor: Use shared templates for feedback and experiment descriptions * change webapp for model codes changes * update proposal * add timeout message for docker run output * fix * refine the code in docker time processing * use .shape instead of len() when do shape eval * won't change size during iteration * support bson sample * sample support jsonl and bson * add former_code to coder prompts * a little speed us in debug data creating * filter progress bar when eval ens and main * avoid costeer makes no change to former code * fix several log error * add timeout judge threshold * fix some bugs in the evaluation of component output shapes * File structure for supporting litellm (#517) Co-authored-by: Young <afe.young@gmail.com> * ignore submission and show processing * ignore submission and show processing * add efficiency notice * refactor: Enhance error message with detailed feedback summary * refactor: Simplify component handling in DSExpGen class * refactor: Update code structure and add docstring for clarity * reserve one sample to each label in data sampling * add Evaluation info * refine costeer code to avoid giving same code twice * use raw_description as plain text * add a prompt hint to avoid same dict key * model task name bug in first model exp gen * fix a typo * add some debug info in costeer tests * task init change * enhance data sampling * refine the code in data_loader * more reasonable loop * fix a bug in data folder description * add error msg & traceback to execution feedback * fix llm error msg detection * add task information to costeer eval & add cache to docker run(use zipfile to store the whole workspace) * fix CI first round * fix CI second round * use txt to store test script to avoid pytest * remove zipfile in requirements * add azure.identity to requirements * ignore debug web page * component test changes * remove redundent task_desc in model coder * feat: Add APE module and prompts for automated prompt engineering * fix: Update .gitignore and improve text formatting in eval.py * refactor: Update print output and improve code comments and imports * style: Fix string formatting and import order in ape.py and fmt.py * exclude ape * add a data folder notice * reduce unnecessary output to stdout * refine the code of describe_data_folder * fix ci * style: streamlit style update (#522) * streamlit style update * fix import * fix format * fix llm_st loop progress bar * debugapp small change * fix model str * refine some prompts * fix model str * fix CI * refine the logic associated with the data_folder * fix ci * small change * set filter_progress_bar as default in execute * model proposal with workflow * add submission check in workflow eval * fix bug * small change * fix CI * fix CI * refactor: Move generate_diff to utils and update DSExpGen logic * more reasonable prompt describing metric direction * fix a minor jinja2 bug * quick fix exp_gen bugs * fix the following bug * fix * fix some bugs * remove workflow from model * add pending_tasks_list in data science to enable coding model and workflow * refine the code for handling JSON-formatted data descriptions * assert with information * ensure correct csv file name * add logging to help record the output * log competition * add log tag for debug llm app * test: Test ds refactor ll (#523) * fix bugs to former scenario * fix a bug because coding in rdloop changed * fix the bug when feedback gets no hypothesis * fix trace structure * change all trace hist when merging hypothesis to experiments * ignore some error in ruff * fix kaggle scenario bugs * refine one line * another bug * another small bug * fix ui bugs * chage kaggle train.py path --------- Co-authored-by: Xu Yang <peteryang@vip.qq.com> * fix CI * Update rdagent/app/data_science/loop.py Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com> * add samplecsv into spec prompts * fix CI --------- Co-authored-by: TPLin22 <tplin2@163.com> Co-authored-by: yuanteli <1957922024@qq.com> Co-authored-by: Xisen Wang <118058822+xisen-w@users.noreply.github.com> Co-authored-by: Bowen Xian <xianbowen@outlook.com> Co-authored-by: Xu Yang <peteryang@vip.qq.com> Co-authored-by: XianBW <36835909+XianBW@users.noreply.github.com> Co-authored-by: Tim <illking@foxmail.com> Co-authored-by: 炼金术师华华 <37462254+YeewahChan@users.noreply.github.com> Co-authored-by: Linlang <30293408+SunsetWolf@users.noreply.github.com> Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
95 lines
3.9 KiB
Python
95 lines
3.9 KiB
Python
import json
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from pathlib import Path
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from typing import Sequence
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from rdagent.components.coder.factor_coder.factor import FactorTask
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from rdagent.components.coder.model_coder.model import ModelFBWorkspace, ModelTask
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from rdagent.core.experiment import Loader, WsLoader
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class FactorTaskLoader(Loader[FactorTask]):
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pass
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class ModelTaskLoader(Loader[ModelTask]):
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pass
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class ModelTaskLoaderJson(ModelTaskLoader):
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# def __init__(self, json_uri: str, select_model: Optional[str] = None) -> None:
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# super().__init__()
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# self.json_uri = json_uri
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# self.select_model = 'A-DGN'
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# def load(self, *argT, **kwargs) -> Sequence[ModelImplTask]:
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# # json is supposed to be in the format of {model_name: dict{model_data}}
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# model_dict = json.load(open(self.json_uri, "r"))
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# if self.select_model is not None:
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# assert self.select_model in model_dict
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# model_name = self.select_model
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# model_data = model_dict[self.select_model]
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# else:
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# model_name, model_data = list(model_dict.items())[0]
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# model_impl_task = ModelImplTask(
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# name=model_name,
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# description=model_data["description"],
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# formulation=model_data["formulation"],
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# variables=model_data["variables"],
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# key=model_name
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# )
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# return [model_impl_task]
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def __init__(self, json_uri: str) -> None:
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super().__init__()
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self.json_uri = json_uri
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def load(self, *argT, **kwargs) -> Sequence[ModelTask]:
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# json is supposed to be in the format of {model_name: dict{model_data}}
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model_dict = json.load(open(self.json_uri, "r"))
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# FIXME: the model in the json file is not right due to extraction error
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# We should fix them case by case in the future
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#
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# formula_info = {
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# "name": "Anti-Symmetric Deep Graph Network (A-DGN)",
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# "description": "A framework for stable and non-dissipative DGN design. It ensures long-range information preservation between nodes and prevents gradient vanishing or explosion during training.",
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# "formulation": r"\mathbf{x}^{\prime}_i = \mathbf{x}_i + \epsilon \cdot \sigma \left( (\mathbf{W}-\mathbf{W}^T-\gamma \mathbf{I}) \mathbf{x}_i + \Phi(\mathbf{X}, \mathcal{N}_i) + \mathbf{b}\right),",
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# "variables": {
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# r"\mathbf{x}_i": "The state of node i at previous layer",
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# r"\epsilon": "The step size in the Euler discretization",
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# r"\sigma": "A monotonically non-decreasing activation function",
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# r"\Phi": "A graph convolutional operator",
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# r"W": "An anti-symmetric weight matrix",
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# r"\mathbf{x}^{\prime}_i": "The node feature matrix at layer l-1",
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# r"\mathcal{N}_i": "The set of neighbors of node u",
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# r"\mathbf{b}": "A bias vector",
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# },
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# "key": "A-DGN",
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# }
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model_impl_task_list = []
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for model_name, model_data in model_dict.items():
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model_impl_task = ModelTask(
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name=model_name,
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description=model_data["description"],
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formulation=model_data["formulation"],
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variables=model_data["variables"],
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model_type=model_data["model_type"],
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)
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model_impl_task_list.append(model_impl_task)
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return model_impl_task_list
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class ModelWsLoader(WsLoader[ModelTask, ModelFBWorkspace]):
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def __init__(self, path: Path) -> None:
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self.path = Path(path)
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def load(self, task: ModelTask) -> ModelFBWorkspace:
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assert task.name is not None
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mti = ModelFBWorkspace(task)
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mti.prepare()
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with open(self.path / f"{task.name}.py", "r") as f:
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code = f.read()
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mti.inject_files(**{"model.py": code})
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return mti
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