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* refine ds modal for more cases: eval and es * update model template * prompts for model and ensemble * fix a bug * fix a bug * init: ds workflow evovingstrategy * Adding ensemble (#505) * Initial Draft * Updating logic for init * Revising * Successful Testing * Updating to use the latest & right class * bug: bug-fixing for testing * data science loop changes * data science loop base * ds loop feedback * fix * remove measure_time because it's duplicated (in LoopBase) * add the knowledge query for data_loader & feature * edit ds workflow evaluator * data_loader bug fix * stop evolving when all tasks completed * llm app change * fix break all complete strategy * Adding queried knowledge (#508) Co-authored-by: XianBW <36835909+XianBW@users.noreply.github.com> * fix loop bug * ds workflow evaluator; test; refine prompts * workflow spec * fix ci * feature task changes * ds loop change * fix a bug in feat * add query knowledge for model and workflow * llm_debug info(for show) using pickle instead of json * remove NextLoopException * loop change * coder raise CoderError when all sub_tasks failed * rename code_dict to file_dict in FBWorkspace * add CoSTEER unittest * now show self.version in Task.get_task_information(), simplify CoSTEER sub tasks definition * remove some properties in ModelTask, add model_type in it. * fix llm app bug * llm web app bug fix * ds loop bug fix * fix: give component code to feature&ens eval * loop catch error bug * rename load_from_raw_data to load_data * feat: Add debug data creation functionality for data science scenarios * support local folder (#511) * support local folder * remove unnecessary random * KaggleScen Subclass * small fix * use template for style description * update default scen to kaggle * update sample data script * make sure frac < 1 * fix a bug * feature spec changes * fix * changeimport order * clear unnecessary std outputs * fix a typo * create sample folder after unzip kaggle data * feature/model test script update * Align the data types across modules. * fix a bug in model eval * show line number * move sample entry point to app * spec & model prompt changes * Refine the competition specification to address the data type problem and the coherence issue. * fix some bugs * add file filter in FBworkspace.code property * support non-binary prediction * avoid too much warnings * fix a bug in ensemble module * filtered the knowledge query in all modules * delete RAG in idea proposal * refine the code in ensemble * show exp workspace in llm_st * exp_gen bug fix * feedback bug fix * use `feature` instead of `feat01` * Trace & method of judging if exp is completed change * fix a bug in package calling and execute ci * fix code * bug fix * bug fix * fix a bug * fix some bugs * fix a bug * refactor: Enhance error handling and feedback in data science loop * support different use_azure on chat and embedding models * multi-model proposal logic * fix a small syntax error * loopBase and some changes * ensemble scores change * fbworkspace.code -> .all_codes * use all model codes in workflow coder * check scores.csv's keys(model_names) * model name changes * add a todo in ensemble test * sota_exp changes * give model info in exp gen * add runner time limit * config using debug data or not in evals * exp to feedback base * add feature code when writing model task * small problem * copying during sampling * update * refactor: Simplify code handling and improve workspace management * model part output fix * print model's execution time * bug fix * ensemble test fix * ens small change * ens_test bug fix * Refine partial expansion logic to display only a few subfolders when their structure is uniform, improving readability in nested directories. * several update on prompts * sample subfolders * Filter the stdout after code execution to remove irrelevant information e.g. progress bars, whitespace characters, excessive line breaks. * Add some more prompts and comments * several update on the first init rounds * model timeout as error * fix pattern of getting model codes in workspace * small bux fix on model prompts * remove get_code_with_key since we have regex pattern * fix: Correct tqdm progress bar update logic in LoopBase class * feat: Add diff generation and enhance feedback mechanism in data science loop * update some fix to model and workflow prompts * refine the logic of progress bar filter * add last_successful_exp in exp_gen * fix a one line bug * add a hint in prompt * fix data sample for bms * fix data sample for bms * hypothesis small fix * crawler readme update * fix component gen * fix bug * annotation change * load description.md if it exists * refactor: Simplify SOTA description handling in feedback and prompts * refactor: Use shared templates for feedback and experiment descriptions * change webapp for model codes changes * update proposal * add timeout message for docker run output * fix * refine the code in docker time processing * use .shape instead of len() when do shape eval * won't change size during iteration * support bson sample * sample support jsonl and bson * add former_code to coder prompts * a little speed us in debug data creating * filter progress bar when eval ens and main * avoid costeer makes no change to former code * fix several log error * add timeout judge threshold * fix some bugs in the evaluation of component output shapes * File structure for supporting litellm (#517) Co-authored-by: Young <afe.young@gmail.com> * ignore submission and show processing * ignore submission and show processing * add efficiency notice * refactor: Enhance error message with detailed feedback summary * refactor: Simplify component handling in DSExpGen class * refactor: Update code structure and add docstring for clarity * reserve one sample to each label in data sampling * add Evaluation info * refine costeer code to avoid giving same code twice * use raw_description as plain text * add a prompt hint to avoid same dict key * model task name bug in first model exp gen * fix a typo * add some debug info in costeer tests * task init change * enhance data sampling * refine the code in data_loader * more reasonable loop * fix a bug in data folder description * add error msg & traceback to execution feedback * fix llm error msg detection * add task information to costeer eval & add cache to docker run(use zipfile to store the whole workspace) * fix CI first round * fix CI second round * use txt to store test script to avoid pytest * remove zipfile in requirements * add azure.identity to requirements * ignore debug web page * component test changes * remove redundent task_desc in model coder * feat: Add APE module and prompts for automated prompt engineering * fix: Update .gitignore and improve text formatting in eval.py * refactor: Update print output and improve code comments and imports * style: Fix string formatting and import order in ape.py and fmt.py * exclude ape * add a data folder notice * reduce unnecessary output to stdout * refine the code of describe_data_folder * fix ci * style: streamlit style update (#522) * streamlit style update * fix import * fix format * fix llm_st loop progress bar * debugapp small change * fix model str * refine some prompts * fix model str * fix CI * refine the logic associated with the data_folder * fix ci * small change * set filter_progress_bar as default in execute * model proposal with workflow * add submission check in workflow eval * fix bug * small change * fix CI * fix CI * refactor: Move generate_diff to utils and update DSExpGen logic * more reasonable prompt describing metric direction * fix a minor jinja2 bug * quick fix exp_gen bugs * fix the following bug * fix * fix some bugs * remove workflow from model * add pending_tasks_list in data science to enable coding model and workflow * refine the code for handling JSON-formatted data descriptions * assert with information * ensure correct csv file name * add logging to help record the output * log competition * add log tag for debug llm app * test: Test ds refactor ll (#523) * fix bugs to former scenario * fix a bug because coding in rdloop changed * fix the bug when feedback gets no hypothesis * fix trace structure * change all trace hist when merging hypothesis to experiments * ignore some error in ruff * fix kaggle scenario bugs * refine one line * another bug * another small bug * fix ui bugs * chage kaggle train.py path --------- Co-authored-by: Xu Yang <peteryang@vip.qq.com> * fix CI * Update rdagent/app/data_science/loop.py Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com> * add samplecsv into spec prompts * fix CI --------- Co-authored-by: TPLin22 <tplin2@163.com> Co-authored-by: yuanteli <1957922024@qq.com> Co-authored-by: Xisen Wang <118058822+xisen-w@users.noreply.github.com> Co-authored-by: Bowen Xian <xianbowen@outlook.com> Co-authored-by: Xu Yang <peteryang@vip.qq.com> Co-authored-by: XianBW <36835909+XianBW@users.noreply.github.com> Co-authored-by: Tim <illking@foxmail.com> Co-authored-by: 炼金术师华华 <37462254+YeewahChan@users.noreply.github.com> Co-authored-by: Linlang <30293408+SunsetWolf@users.noreply.github.com> Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
142 lines
5.2 KiB
Python
142 lines
5.2 KiB
Python
import pickle
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import site
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import traceback
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from pathlib import Path
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from typing import Dict, Optional
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from rdagent.components.coder.CoSTEER.task import CoSTEERTask
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from rdagent.core.experiment import Experiment, FBWorkspace
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from rdagent.core.utils import cache_with_pickle
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from rdagent.oai.llm_utils import md5_hash
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from rdagent.utils.env import KGDockerEnv, QTDockerEnv
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class ModelTask(CoSTEERTask):
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def __init__(
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self,
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name: str,
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description: str,
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architecture: str,
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*args,
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hyperparameters: Dict[str, str],
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formulation: str = None,
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variables: Dict[str, str] = None,
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model_type: Optional[str] = None,
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**kwargs,
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) -> None:
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self.formulation: str = formulation
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self.architecture: str = architecture
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self.variables: str = variables
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self.hyperparameters: str = hyperparameters
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self.model_type: str = (
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model_type # Tabular for tabular model, TimesSeries for time series model, Graph for graph model, XGBoost for XGBoost model
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)
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super().__init__(name=name, description=description, *args, **kwargs)
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def get_task_information(self):
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task_desc = f"""name: {self.name}
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description: {self.description}
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"""
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task_desc += f"formulation: {self.formulation}\n" if self.formulation else ""
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task_desc += f"architecture: {self.architecture}\n"
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task_desc += f"variables: {self.variables}\n" if self.variables else ""
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task_desc += f"hyperparameters: {self.hyperparameters}\n"
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task_desc += f"model_type: {self.model_type}\n"
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return task_desc
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@staticmethod
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def from_dict(dict):
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return ModelTask(**dict)
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def __repr__(self) -> str:
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return f"<{self.__class__.__name__} {self.name}>"
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class ModelFBWorkspace(FBWorkspace):
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"""
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It is a Pytorch model implementation task;
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All the things are placed in a folder.
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Folder
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- data source and documents prepared by `prepare`
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- Please note that new data may be passed in dynamically in `execute`
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- code (file `model.py` ) injected by `inject_code`
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- the `model.py` that contains a variable named `model_cls` which indicates the implemented model structure
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- `model_cls` is a instance of `torch.nn.Module`;
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We support two ways of interface:
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(version 1) for qlib we'll make a script to import the model in the implementation in file `model.py` after setting the cwd into the directory
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- from model import model_cls
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- initialize the model by initializing it `model_cls(input_dim=INPUT_DIM)`
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- And then verify the model.
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(version 2) for kaggle we'll make a script to call the fit and predict function in the implementation in file `model.py` after setting the cwd into the directory
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"""
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def hash_func(
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self,
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batch_size: int = 8,
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num_features: int = 10,
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num_timesteps: int = 4,
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num_edges: int = 20,
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input_value: float = 1.0,
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param_init_value: float = 1.0,
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) -> str:
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target_file_name = f"{batch_size}_{num_features}_{num_timesteps}_{input_value}_{param_init_value}"
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for code_file_name in sorted(list(self.file_dict.keys())):
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target_file_name = f"{target_file_name}_{self.file_dict[code_file_name]}"
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return md5_hash(target_file_name)
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@cache_with_pickle(hash_func)
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def execute(
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self,
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batch_size: int = 8,
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num_features: int = 10,
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num_timesteps: int = 4,
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num_edges: int = 20,
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input_value: float = 1.0,
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param_init_value: float = 1.0,
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):
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super().execute()
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try:
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qtde = QTDockerEnv() if self.target_task.version == 1 else KGDockerEnv()
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qtde.prepare()
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if self.target_task.version == 1:
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dump_code = f"""
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MODEL_TYPE = "{self.target_task.model_type}"
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BATCH_SIZE = {batch_size}
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NUM_FEATURES = {num_features}
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NUM_TIMESTEPS = {num_timesteps}
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NUM_EDGES = {num_edges}
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INPUT_VALUE = {input_value}
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PARAM_INIT_VALUE = {param_init_value}
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{(Path(__file__).parent / 'model_execute_template_v1.txt').read_text()}
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"""
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elif self.target_task.version == 2:
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dump_code = (Path(__file__).parent / "model_execute_template_v2.txt").read_text()
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log, results = qtde.dump_python_code_run_and_get_results(
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code=dump_code,
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dump_file_names=["execution_feedback_str.pkl", "execution_model_output.pkl"],
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local_path=str(self.workspace_path),
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env={},
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code_dump_file_py_name="model_test",
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)
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if len(results) == 0:
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raise RuntimeError(f"Error in running the model code: {log}")
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[execution_feedback_str, execution_model_output] = results
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except Exception as e:
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execution_feedback_str = f"Execution error: {e}\nTraceback: {traceback.format_exc()}"
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execution_model_output = None
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if len(execution_feedback_str) > 2000:
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execution_feedback_str = (
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execution_feedback_str[:1000] + "....hidden long error message...." + execution_feedback_str[-1000:]
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)
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return execution_feedback_str, execution_model_output
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ModelExperiment = Experiment
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