* docs: document extra_volumes dict format in DockerConf
* feat: accept dict values in extra_volumes to specify bind and mode
* fix: skip invalid PDF reports to prevent infinite loop
* from break to raise self.LoopTerminationError
* format with black
---------
Co-authored-by: Young <afe.young@gmail.com>
* start to work on multi-trace + async
* init ver of async-multi-tarce, to test
* add eng-ver log
* complete version of async+ mul-trace
* debug
* fix bug on DS_RD_SETTING.get()
* update
* fix bug + simplif the usage of async in multi-trace
* fix mini bug of arg_name
* Move local_selection into class Experiment & clean the code
* add coder version
* merge cooder and feedback prompts
* align v2 and v3 proposal prompts
* fix a small bug
* fix a bug
* fix another bug
* support both function calling and json mode in v2 proposal
* fix minor bug
* reformat
* remove proposal v3
* fix a small bug in json mode
* fix CI
* remove tmp file
* remove v3 check
---------
Co-authored-by: Xu Yang <xuyang1@microsoft.com>
* add custom data setting for the data science scene
* fix ci?
* fix ci
* add custom data as an example
* fix ci
* add package
* fix test_import ci error
* docs: update explanation for separate config use in litellm
* docs: update default backend to `rdagent.oai.backend.LiteLLMAPIBackend`
* docs: update .rst format
* Update installation_and_configuration.rst
* remove state.times in old ui
* remove "r" tag
* remove "d" tag
* remove "ef" tag
* remove "init" tag
* fix CI
* remove old tag in app UI
* fix bugs
* fix CI
* some updates
* filter tags
* feat: replace hard-coded cache paths with dynamic cache_path config
* style: reorder wait_retry import and format chmod list
* refactor: pass workspace_path to chmod command and use DockerConf check
* refactor: split workflow into pkg, add WorkflowTracker & wait_retry
* feat: add async LoopBase with parallel workers and step semaphores
* fix: replace pickle with dill and run blocking tasks via joblib wrapper
* feat: add log format settings, dynamic parallelism & pickle-based snapshot
* fix: default step semaphore to 1 and avoid subprocess when single worker
* merge bowen's changes
* merge tim's changes
* refactor: extract component task mapping, add conditional logger setup
* lint
* refactor: add type hints and safer remain_time metric logging in workflow
* lint
* fix: allow BadRequestError to be pickled via custom copyreg reducer
* fix: stop loop when LoopTerminationError is raised in LoopBase
* lint
* refactor: make log tag context-local using ContextVar for thread safety
* feat: add subproc_step flag and helper to decide subprocess execution
* fix: use ./cache path and normalize relative volume bind paths
* fix: reset loop_idx to 0 on loop restart/resume to ensure correct flow
* fix: avoid chmod on cache and input dirs in Env timeout wrapper
* fix: skip chmod on 'cache' and 'input' dirs using find -prune
* fix: restrict chmod to immediate mount dirs excluding cache/input
* fix: chmod cache and input dirs alongside their contents after entry run
* fix: guard chmod with directory checks for cache and input
* fix: prefix mount_path in chmod command for cache/input dirs
* fix: drop quotes from find exclude patterns to ensure chmod executes
* fix: skip chmod on cache/input directories to avoid warning spam
* feat: support string volume mappings and poll subprocess stdout/stderr
* support remove symbolic link
* test: use dynamic home path and code volume in LocalEnv local_simple
* fix: skip trace and progress update when loop step is withdrawn
* refactor: add clean_workspace util and non-destructive workspace backup
* fix: preserve symlinks when backing up workspace with copytree
* fix: prevent AttributeError when _pbar not yet initialized in LoopBase
* perf: replace shutil.copytree with rsync for faster workspace backup
* fix: cast log directory Path to str in tar command of data science loop
* fix: use portable 'cp -r -P' instead of rsync for workspace backup
* fix: add retry and logging to workspace backup for robustness
* refactor: extract backup_folder helper and reuse in DataScienceRDLoop
* fix: propagate backup errors & default _pbar getattr to avoid error
* fix the division by zero bug
* refactor: execute RD loops via asyncio.run and add necessary imports
* lint
* lint
* lint
---------
Co-authored-by: Xu <v-xuminrui@microsoft.com>
* fix the logic of kb-inject, allow different verion
* set more flexiable proposal-version change for multi-tarce
* auto-lint
* fix the divede-zero-bug in a trival way
* keep the dump imp. first, update in next version
* use get_sub_trace_count() to get trace_num_count
* fix the conern case bug of divide-zero
* update corner case
* fix the bug
* auto-lint
* fis the bug
* fix the logic bug in max_sota_filter
* fix bug of old version of self.exp_gen.gen
* update the reset_exp_gen_version
* use get_parent_exps to replace all collect_all_ancestors
* auto lint
* fix the bug of reset_exp_gen_version
* fix bug: update V3's old hypothesis_rank
* trival patch on gap of V3 & V2
* make dump patch to unify proposal_V3's dentify_problems
* auto-lint
* fix the bug of sub_trace_count
* chore: avoid incorporate changes
best as sota
merge hypothesis
fix: max_retrieve_num after decision
chore: select last experiments and feedbacks
* add the set_current_selection before the exp_gen when merging
add trace.NEW_ROOT
fix: no scen_prob_multiplier
fix: use regex with timeout
chore: hypothesis_rank with selected_idx
chore: define is_parent in proposal
chore: rename collect_all_ancestors to get_parent_exps
---------
Co-authored-by: you-n-g <you-n-g@users.noreply.github.com>
Co-authored-by: Young <afe.young@gmail.com>
Co-authored-by: Xu <v-xuminrui@microsoft.com>
Co-authored-by: Xu Yang <xuyang1@microsoft.com>
you-n-g