add kaggle tpl (#482)

This commit is contained in:
XianBW
2024-11-11 22:31:32 +08:00
committed by GitHub
parent 8c4c53339c
commit fe7eb4cbe1
10 changed files with 259 additions and 3 deletions
@@ -7,7 +7,7 @@ baseline model for many classification tasks.
import pandas as pd
from sklearn.ensemble import RandomForestClassifier
from sklearn.metrics import accuracy_score
from sklearn.metrics import roc_auc_score
def fit(X_train: pd.DataFrame, y_train: pd.Series, X_valid: pd.DataFrame, y_valid: pd.Series):
@@ -22,8 +22,8 @@ def fit(X_train: pd.DataFrame, y_train: pd.Series, X_valid: pd.DataFrame, y_vali
# Validate the model
y_valid_pred = model.predict(X_valid)
accuracy = accuracy_score(y_valid, y_valid_pred)
print(f"Validation Accuracy: {accuracy:.4f}")
auroc = roc_auc_score(y_valid, y_valid_pred)
print(f"Validation AUROC: {auroc:.4f}")
return model
@@ -18,6 +18,7 @@ def fit(X_train: pd.DataFrame, y_train: pd.DataFrame, X_valid: pd.DataFrame, y_v
"device": "cuda",
"tree_method": "hist",
"objective": "binary:logistic",
"eval_metric": "auc",
}
num_boost_round = 10
@@ -0,0 +1,34 @@
import os
import pandas as pd
from sklearn.model_selection import train_test_split
from sklearn.preprocessing import MinMaxScaler
def preprocess_script():
"""
This method applies the preprocessing steps to the training, validation, and test datasets.
"""
if os.path.exists("/kaggle/input/X_train.pkl"):
X_train = pd.read_pickle("/kaggle/input/X_train.pkl")
X_valid = pd.read_pickle("/kaggle/input/X_valid.pkl")
y_train = pd.read_pickle("/kaggle/input/y_train.pkl")
y_valid = pd.read_pickle("/kaggle/input/y_valid.pkl")
X_test = pd.read_pickle("/kaggle/input/X_test.pkl")
others = pd.read_pickle("/kaggle/input/others.pkl")
return X_train, X_valid, y_train, y_valid, X_test, *others
train_df = pd.read_csv("/kaggle/input/train.csv")
test_df = pd.read_csv("/kaggle/input/test.csv")
X = train_df.drop(["pressure", "id"], axis=1)
y = train_df["pressure"]
X_train, X_valid, y_train, y_valid = train_test_split(X, y, test_size=0.3, random_state=0)
# Load and preprocess the test data
ids = test_df["id"]
X_test = test_df.drop(["id"], axis=1)
return X_train, X_valid, y_train, y_valid, X_test, ids
@@ -0,0 +1,23 @@
import pandas as pd
"""
Here is the feature engineering code for each task, with a class that has a fit and transform method.
Remember
"""
class IdentityFeature:
def fit(self, train_df: pd.DataFrame):
"""
Fit the feature engineering model to the training data.
"""
pass
def transform(self, X: pd.DataFrame):
"""
Transform the input data.
"""
return X
feature_engineering_cls = IdentityFeature
@@ -0,0 +1,40 @@
"""
Motivation of the model:
The Random Forest model is chosen for its robustness and ability to handle large datasets with higher dimensionality.
It reduces overfitting by averaging multiple decision trees and typically performs well out of the box, making it a good
baseline model for many classification tasks.
"""
import pandas as pd
from sklearn.ensemble import RandomForestRegressor
from sklearn.metrics import mean_absolute_error
def fit(X_train: pd.DataFrame, y_train: pd.Series, X_valid: pd.DataFrame, y_valid: pd.Series):
"""
Define and train the Random Forest model. Merge feature selection into the pipeline.
"""
# Initialize the Random Forest model
model = RandomForestRegressor(n_estimators=100, random_state=32, n_jobs=-1)
# Fit the model
model.fit(X_train, y_train)
# Predict on the validation set
y_valid_pred = model.predict(X_valid)
# Calculate the mean absolute error on the validation set
mae = mean_absolute_error(y_valid, y_valid_pred)
print(f"Validation MAE of RandomForestRegressor: {mae}")
return model
def predict(model, X):
"""
Keep feature selection's consistency and make predictions.
"""
# Predict using the trained model
y_pred = model.predict(X)
return y_pred.reshape(-1, 1)
@@ -0,0 +1,40 @@
"""
motivation of the model
"""
import pandas as pd
import xgboost as xgb
def fit(X_train: pd.DataFrame, y_train: pd.DataFrame, X_valid: pd.DataFrame, y_valid: pd.DataFrame) -> xgb.Booster:
"""Define and train the model. Merge feature_select"""
# 将数据转换为 DMatrix 并指定设备
dtrain = xgb.DMatrix(X_train, label=y_train)
dvalid = xgb.DMatrix(X_valid, label=y_valid)
params = {
"learning_rate": 0.1,
"subsample": 0.95,
"colsample_bytree": 0.11,
"max_depth": 2,
"booster": "gbtree",
"reg_lambda": 66.1,
"reg_alpha": 15.9,
"random_state": 42,
"tree_method": "hist",
"device": "cuda",
"eval_metric": "mae",
}
num_boost_round = 1000
model = xgb.train(params, dtrain, num_boost_round=num_boost_round, evals=[(dvalid, "validation")], verbose_eval=100)
return model
def predict(model: xgb.Booster, X):
"""
Keep feature select's consistency.
"""
dtest = xgb.DMatrix(X)
y_pred = model.predict(dtest)
return y_pred
@@ -0,0 +1,12 @@
import pandas as pd
def select(X: pd.DataFrame) -> pd.DataFrame:
"""
Select relevant features. To be used in fit & predict function.
"""
# For now, we assume all features are relevant. This can be expanded to feature selection logic.
if X.columns.nlevels == 1:
return X
X.columns = ["_".join(str(i) for i in col).strip() for col in X.columns.values]
return X
@@ -0,0 +1,12 @@
import pandas as pd
def select(X: pd.DataFrame) -> pd.DataFrame:
"""
Select relevant features. To be used in fit & predict function.
"""
# For now, we assume all features are relevant. This can be expanded to feature selection logic.
if X.columns.nlevels == 1:
return X
X.columns = ["_".join(str(i) for i in col).strip() for col in X.columns.values]
return X
@@ -0,0 +1,12 @@
import pandas as pd
def select(X: pd.DataFrame) -> pd.DataFrame:
"""
Select relevant features. To be used in fit & predict function.
"""
# For now, we assume all features are relevant. This can be expanded to feature selection logic.
if X.columns.nlevels == 1:
return X
X.columns = ["_".join(str(i) for i in col).strip() for col in X.columns.values]
return X
@@ -0,0 +1,82 @@
import importlib.util
import random
from pathlib import Path
import numpy as np
import pandas as pd
from fea_share_preprocess import preprocess_script
from sklearn.metrics import mean_absolute_error
# Set random seed for reproducibility
SEED = 42
random.seed(SEED)
np.random.seed(SEED)
DIRNAME = Path(__file__).absolute().resolve().parent
def import_module_from_path(module_name, module_path):
spec = importlib.util.spec_from_file_location(module_name, module_path)
module = importlib.util.module_from_spec(spec)
spec.loader.exec_module(module)
return module
# 1) Preprocess the data
X_train, X_valid, y_train, y_valid, X_test, ids = preprocess_script()
# 2) Auto feature engineering
X_train_l, X_valid_l = [], []
X_test_l = []
for f in DIRNAME.glob("feature/feat*.py"):
cls = import_module_from_path(f.stem, f).feature_engineering_cls()
cls.fit(X_train)
X_train_f = cls.transform(X_train)
X_valid_f = cls.transform(X_valid)
X_test_f = cls.transform(X_test)
if X_train_f.shape[-1] == X_valid_f.shape[-1] and X_train_f.shape[-1] == X_test_f.shape[-1]:
X_train_l.append(X_train_f)
X_valid_l.append(X_valid_f)
X_test_l.append(X_test_f)
print(f"Feature [{f.stem}] has been added to the feature list")
X_train = pd.concat(X_train_l, axis=1, keys=[f"feature_{i}" for i in range(len(X_train_l))])
X_valid = pd.concat(X_valid_l, axis=1, keys=[f"feature_{i}" for i in range(len(X_valid_l))])
X_test = pd.concat(X_test_l, axis=1, keys=[f"feature_{i}" for i in range(len(X_test_l))])
model_l = [] # list[tuple[model, predict_func]]
for f in DIRNAME.glob("model/model*.py"):
select_python_path = f.with_name(f.stem.replace("model", "select") + f.suffix)
select_m = import_module_from_path(select_python_path.stem, select_python_path)
X_train_selected = select_m.select(X_train.copy())
X_valid_selected = select_m.select(X_valid.copy())
m = import_module_from_path(f.stem, f)
model_l.append((m.fit(X_train_selected, y_train, X_valid_selected, y_valid), m.predict, select_m))
print(f"Model [{f.stem}] has been trained")
# 4) Evaluate the model on the validation set
metrics_all = []
for model, predict_func, select_m in model_l:
X_valid_selected = select_m.select(X_valid.copy())
y_valid_pred = predict_func(model, X_valid_selected)
mae = mean_absolute_error(y_valid, y_valid_pred)
print(f"[{type(model).__name__}] MAE on valid set: {mae}")
metrics_all.append(mae)
# 5) Save the validation accuracy
max_index = np.argmin(metrics_all)
pd.Series(data=[metrics_all[max_index]], index=["MAE"]).to_csv("submission_score.csv")
# 6) Make predictions on the test set and save them
X_test_selected = model_l[max_index][2].select(X_test.copy())
y_test_pred = model_l[max_index][1](model_l[max_index][0], X_test_selected).flatten() + 1
# 7) Submit predictions for the test set
submission_result = pd.DataFrame(y_test_pred, columns=["pressure"])
submission_result.insert(0, "id", ids)
submission_result.to_csv("submission.csv", index=False)