refactor: research - move domain to repository root

scripts/README.md

@@ -12,6 +12,6 @@
 - `check-ai-citation.py`：`llms.txt`、`assets/ai-citation/llms-full.txt` 与 AI 引用语料路径和锚点检查脚本。
 - `check-external-resources.py`：本地外部资源注册表字段、分类统计、ID 与链接形态检查脚本。
 - `check-research-raw.py`：研究域 raw 原始事实层、Git 工作树、来源清单和核心材料文件检查脚本。
-- `fetch-research-raw.py`：按 `docs/research/*/domain.yml` 拉取 GitHub 研究对象的 raw 原始事实层和 `repository/` 工作树。
+- `fetch-research-raw.py`：按 `research/*/domain.yml` 拉取 GitHub 研究对象的 raw 原始事实层和 `repository/` 工作树。
 - `check-wiki.py`：GitHub Wiki 独立仓库本地 checkout 的页面覆盖、内链和旧口径检查脚本。
 - `sync-doc-toc.py`：兼容旧线性 README 的细粒度目录生成脚本；当前拆分结构下通常无变更。

scripts/check-ai-citation.py

@@ -19,7 +19,7 @@ AI_MARKDOWN_DIR = Path("assets/ai-citation")
 PATH_PATTERN = re.compile(
     r"(?<![\w./-])("
     r"(?:README|AGENTS)\.md"
-    r"|(?:docs|assets|skills|prompts|metadata|scripts|tools)/[^\s`，。；：、)）]+"
+    r"|(?:docs|research|assets|skills|prompts|metadata|scripts|tools)/[^\s`，。；：、)）]+"
     r"|[A-Za-z0-9_.-]+\.(?:md|txt|yml)"
     r"|llms\.txt"
     r")"

scripts/check-directory-docs.py

@@ -22,7 +22,7 @@ REQUIRED_DIRS = [
     Path("docs/getting-started"),
     Path("docs/philosophy"),
     Path("docs/references"),
-    Path("docs/research"),
+    Path("research"),
     Path("docs/workflow"),
     Path("metadata"),
     Path("prompts"),
@@ -77,11 +77,10 @@ def should_skip(directory: Path) -> bool:
 def is_research_repository_snapshot(rel: Path) -> bool:
     parts = rel.parts
     return (
-        len(parts) >= 5
-        and parts[0] == "docs"
-        and parts[1] == "research"
-        and parts[3] == "raw"
-        and parts[4] == "repository"
+        len(parts) >= 4
+        and parts[0] == "research"
+        and parts[2] == "raw"
+        and parts[3] == "repository"
     )
 
 

scripts/check-doc-structure.py

@@ -62,11 +62,10 @@ def should_skip(path: Path) -> bool:
 def is_research_repository_snapshot(rel: Path) -> bool:
     parts = rel.parts
     return (
-        len(parts) >= 5
-        and parts[0] == "docs"
-        and parts[1] == "research"
-        and parts[3] == "raw"
-        and parts[4] == "repository"
+        len(parts) >= 4
+        and parts[0] == "research"
+        and parts[2] == "raw"
+        and parts[3] == "repository"
     )
 
 
@@ -243,7 +242,7 @@ def main() -> int:
     readme_paths = {Path("docs/README.md")}
     for fields in taxonomy_sections().values():
         entry = fields.get("entry", "")
-        if entry.startswith("docs/") and entry.endswith("/README.md"):
+        if entry.endswith("/README.md"):
             readme_paths.add(Path(entry))
 
     for rel_path in sorted(readme_paths):

scripts/check-local-links.py

@@ -109,11 +109,10 @@ def should_skip(path: Path) -> bool:
 def is_research_repository_snapshot(rel: Path) -> bool:
     parts = rel.parts
     return (
-        len(parts) >= 5
-        and parts[0] == "docs"
-        and parts[1] == "research"
-        and parts[3] == "raw"
-        and parts[4] == "repository"
+        len(parts) >= 4
+        and parts[0] == "research"
+        and parts[2] == "raw"
+        and parts[3] == "repository"
     )
 
 

scripts/check-markdown-details.py

@@ -55,11 +55,10 @@ def should_skip(path: Path) -> bool:
 def is_research_repository_snapshot(rel: Path) -> bool:
     parts = rel.parts
     return (
-        len(parts) >= 5
-        and parts[0] == "docs"
-        and parts[1] == "research"
-        and parts[3] == "raw"
-        and parts[4] == "repository"
+        len(parts) >= 4
+        and parts[0] == "research"
+        and parts[2] == "raw"
+        and parts[3] == "repository"
     )
 
 

scripts/check-research-raw.py

@@ -10,7 +10,7 @@ from pathlib import Path
 
 
 ROOT = Path(__file__).resolve().parents[1]
-RESEARCH_DIR = ROOT / "docs" / "research"
+RESEARCH_DIR = ROOT / "research"
 REQUIRED_RAW_FILES = [
     "README.md",
     "AGENTS.md",

scripts/fetch-research-raw.py

@@ -1,5 +1,5 @@
 #!/usr/bin/env python3
-"""Fetch raw GitHub facts for docs/research repository domains."""
+"""Fetch raw GitHub facts for research repository domains."""
 
 from __future__ import annotations
 
@@ -13,7 +13,7 @@ from pathlib import Path
 
 
 ROOT = Path(__file__).resolve().parents[1]
-RESEARCH_DIR = ROOT / "docs" / "research"
+RESEARCH_DIR = ROOT / "research"
 
 REPO_VIEW_FIELDS = [
     "nameWithOwner",