feat(WalkForward): added regression/classification switch, archived old experiments, wrapped the process into run_whole_pipeline() (#10)

* refactor(WalkForward): cleaned up training & evaluation code

* refactor: added run_whole_pipeline(), moved all previous models to archive
This commit is contained in:
Mark Aron Szulyovszky
2021-12-14 18:16:17 +01:00
committed by GitHub
parent 7aedb91069
commit d047b7417e
89 changed files with 10763 additions and 6477 deletions
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import keras
def create_basic_lstm_model(input_shape, num_classes):
model = keras.Sequential()
model.add(keras.layers.LSTM(units = 10, return_sequences = True, activation = 'sigmoid', input_shape=input_shape))
model.add(keras.layers.Flatten())
model.add(keras.layers.Dropout(0.3))
model.add(keras.layers.Dense(units = 64, activation = 'sigmoid'))
model.add(keras.layers.Dropout(0.3))
model.add(keras.layers.Dense(units = 32, activation = 'sigmoid'))
model.add(keras.layers.Dropout(0.3))
model.add(keras.layers.Dense(units = num_classes, activation = 'linear'))
return model
def create_basic_cnn_model(input_shape, num_classes):
model = keras.Sequential()
model.add(keras.layers.Conv1D(filters=32, kernel_size=3, padding="same", input_shape=input_shape))
model.add(keras.layers.BatchNormalization())
model.add(keras.layers.ReLU())
model.add(keras.layers.Conv1D(filters=32, kernel_size=3, padding="same"))
model.add(keras.layers.BatchNormalization())
model.add(keras.layers.ReLU())
model.add(keras.layers.Conv1D(filters=32, kernel_size=3, padding="same"))
model.add(keras.layers.BatchNormalization())
model.add(keras.layers.ReLU())
model.add(keras.layers.GlobalAveragePooling1D())
model.add(keras.layers.Dense(num_classes, activation="linear"))
return model
def create_resnet_cnn_model(input_shape, num_classes):
n_feature_maps = 24
input_layer = keras.layers.Input(input_shape)
conv_x = keras.layers.Conv1D(filters=n_feature_maps, kernel_size=8, padding='same')(input_layer)
conv_x = keras.layers.BatchNormalization()(conv_x)
conv_x = keras.layers.Activation('relu')(conv_x)
conv_y = keras.layers.Conv1D(filters=n_feature_maps, kernel_size=5, padding='same')(conv_x)
conv_y = keras.layers.BatchNormalization()(conv_y)
conv_y = keras.layers.Activation('relu')(conv_y)
conv_z = keras.layers.Conv1D(filters=n_feature_maps, kernel_size=3, padding='same')(conv_y)
conv_z = keras.layers.BatchNormalization()(conv_z)
# expand channels for the sum
shortcut_y = keras.layers.Conv1D(filters=n_feature_maps, kernel_size=1, padding='same')(input_layer)
shortcut_y = keras.layers.BatchNormalization()(shortcut_y)
output_block_1 = keras.layers.add([shortcut_y, conv_z])
output_block_1 = keras.layers.Activation('relu')(output_block_1)
# BLOCK 2
conv_x = keras.layers.Conv1D(filters=n_feature_maps * 2, kernel_size=8, padding='same')(output_block_1)
conv_x = keras.layers.BatchNormalization()(conv_x)
conv_x = keras.layers.Activation('relu')(conv_x)
conv_y = keras.layers.Conv1D(filters=n_feature_maps * 2, kernel_size=5, padding='same')(conv_x)
conv_y = keras.layers.BatchNormalization()(conv_y)
conv_y = keras.layers.Activation('relu')(conv_y)
conv_z = keras.layers.Conv1D(filters=n_feature_maps * 2, kernel_size=3, padding='same')(conv_y)
conv_z = keras.layers.BatchNormalization()(conv_z)
# expand channels for the sum
shortcut_y = keras.layers.Conv1D(filters=n_feature_maps * 2, kernel_size=1, padding='same')(output_block_1)
shortcut_y = keras.layers.BatchNormalization()(shortcut_y)
output_block_2 = keras.layers.add([shortcut_y, conv_z])
output_block_2 = keras.layers.Activation('relu')(output_block_2)
# BLOCK 3
conv_x = keras.layers.Conv1D(filters=n_feature_maps * 2, kernel_size=8, padding='same')(output_block_2)
conv_x = keras.layers.BatchNormalization()(conv_x)
conv_x = keras.layers.Activation('relu')(conv_x)
conv_y = keras.layers.Conv1D(filters=n_feature_maps * 2, kernel_size=5, padding='same')(conv_x)
conv_y = keras.layers.BatchNormalization()(conv_y)
conv_y = keras.layers.Activation('relu')(conv_y)
conv_z = keras.layers.Conv1D(filters=n_feature_maps * 2, kernel_size=3, padding='same')(conv_y)
conv_z = keras.layers.BatchNormalization()(conv_z)
# no need to expand channels because they are equal
shortcut_y = keras.layers.BatchNormalization()(output_block_2)
output_block_3 = keras.layers.add([shortcut_y, conv_z])
output_block_3 = keras.layers.Activation('relu')(output_block_3)
# FINAL
gap_layer = keras.layers.GlobalAveragePooling1D()(output_block_3)
output_layer = keras.layers.Dense(num_classes, activation='linear')(gap_layer)
model = keras.models.Model(inputs=input_layer, outputs=output_layer)
return model
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from keras import layers
import keras
def transformer_encoder(inputs, head_size, num_heads, ff_dim, dropout=0):
# Normalization and Attention
x = layers.LayerNormalization(epsilon=1e-6)(inputs)
x = layers.MultiHeadAttention(
key_dim=head_size, num_heads=num_heads, dropout=dropout
)(x, x)
x = layers.Dropout(dropout)(x)
res = x + inputs
# Feed Forward Part
x = layers.LayerNormalization(epsilon=1e-6)(res)
x = layers.Conv1D(filters=ff_dim, kernel_size=1, activation="relu")(x)
x = layers.Dropout(dropout)(x)
x = layers.Conv1D(filters=inputs.shape[-1], kernel_size=1)(x)
return x + res
def create_basic_transformer_model(
input_shape,
n_classes,
head_size,
num_heads,
ff_dim,
num_transformer_blocks,
mlp_units,
dropout=0,
mlp_dropout=0,
):
inputs = keras.Input(shape=input_shape)
x = inputs
for _ in range(num_transformer_blocks):
x = transformer_encoder(x, head_size, num_heads, ff_dim, dropout)
x = layers.GlobalAveragePooling1D(data_format="channels_first")(x)
for dim in mlp_units:
x = layers.Dense(dim, activation="relu")(x)
x = layers.Dropout(mlp_dropout)(x)
outputs = layers.Dense(n_classes, activation="softmax")(x)
return keras.Model(inputs, outputs)