refactor(WalkForward): separate train / test functions to help with inference later (#158)

* refactor(WalkForward): separate train / test functions (draft) to potentially help with inference later

* fix(Training): use the new separate train / test functions

* feat(Training): return and pass in scalers that are necessary for inference

* fix(Project): runtime errors

* fix(WalkForward): use the correct `train_from` value

* fix(Tests): for new walk_forward functions()

* refactor(WalkForward): rename `walk_forward_test()` to `walk_forward_inference()`
This commit is contained in:
Mark Aron Szulyovszky
2022-01-12 14:42:16 +01:00
committed by GitHub
parent 5db2a3b935
commit c611481eb6
7 changed files with 101 additions and 50 deletions
+3 -3
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@@ -10,7 +10,7 @@ def get_dev_config() -> tuple[dict, dict, dict]:
sliding_window_size_primary = 380,
sliding_window_size_meta_labeling = 1,
retrain_every = 20,
scaler = 'minmax', # 'normalize' 'minmax' 'standardize' 'none'
scaler = 'minmax', # 'normalize' 'minmax' 'standardize'
)
data_config = dict(
@@ -53,7 +53,7 @@ def get_default_ensemble_config() -> tuple[dict, dict, dict]:
sliding_window_size_primary = 380,
sliding_window_size_meta_labeling = 240,
retrain_every = 20,
scaler = 'minmax', # 'normalize' 'minmax' 'standardize' 'none'
scaler = 'minmax', # 'normalize' 'minmax' 'standardize'
)
data_config = dict(
@@ -98,7 +98,7 @@ def get_lightweight_ensemble_config() -> tuple[dict, dict, dict]:
sliding_window_size_primary = 380,
sliding_window_size_meta_labeling = 240,
retrain_every = 20,
scaler = 'minmax', # 'normalize' 'minmax' 'standardize' 'none'
scaler = 'minmax', # 'normalize' 'minmax' 'standardize'
)
data_config = dict(
+1 -3
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@@ -25,9 +25,7 @@ def select_features(X: pd.DataFrame, y: pd.Series, model: Model, n_features_to_s
# 2. Recursive feature selection
cv = TimeSeriesSplit(n_splits=5)
scaler = get_scaler(scaling)
X_scaled = X.copy()
if scaler is not None:
X_scaled = scaler.fit_transform(X_scaled)
X_scaled = scaler.fit_transform(X)
feat_selector_model = model.model
if hasattr(feat_selector_model, 'feature_importances_') == False and hasattr(feat_selector_model, 'coef_') == False:
+12 -4
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@@ -1,9 +1,10 @@
import numpy as np
import pandas as pd
from training.walk_forward import walk_forward_train_test
from training.walk_forward import walk_forward_train, walk_forward_inference
from models.base import Model
from utils.evaluate import evaluate_predictions
from sklearn.preprocessing import MinMaxScaler
no_of_rows = 100
@@ -67,9 +68,9 @@ def test_evaluation():
window_length = 10
model = EvenOddStubModel(window_length = window_length)
scaler = None
scaler = MinMaxScaler()
models, predictions, probs = walk_forward_train_test(
models, scalers = walk_forward_train(
model_name='test',
model=model,
X=X,
@@ -78,7 +79,14 @@ def test_evaluation():
expanding_window=False,
window_size=window_length,
retrain_every=10,
scaler=scaler
scaler=scaler)
predictions, probs = walk_forward_inference(
model_name='test',
models=models,
scalers=scalers,
X=X,
expanding_window=False,
window_size=window_length
)
# verify if predictions are the same as y
+12 -3
View File
@@ -1,7 +1,8 @@
import numpy as np
import pandas as pd
from training.walk_forward import walk_forward_train_test
from training.walk_forward import walk_forward_train, walk_forward_inference
from models.base import Model
from sklearn.preprocessing import MinMaxScaler
no_of_rows = 100
@@ -65,9 +66,9 @@ def test_walk_forward_train_test():
window_length = 10
model = IncrementingStubModel(window_length = window_length)
scaler = None
scaler = MinMaxScaler()
models, predictions, probs = walk_forward_train_test(
models, scalers = walk_forward_train(
model_name='test',
model=model,
X=X,
@@ -77,6 +78,14 @@ def test_walk_forward_train_test():
window_size=window_length,
retrain_every=10,
scaler=scaler)
predictions, probs = walk_forward_inference(
model_name='test',
models=models,
scalers=scalers,
X=X,
expanding_window=False,
window_size=window_length
)
# verify if predictions are the same as y
for i in range(window_length+2, no_of_rows):
+10 -2
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@@ -1,6 +1,6 @@
import pandas as pd
from typing import Literal
from training.walk_forward import walk_forward_train_test
from training.walk_forward import walk_forward_train, walk_forward_inference
from utils.evaluate import evaluate_predictions
from models.base import Model
from utils.scaler import get_scaler
@@ -31,7 +31,7 @@ def train_primary_model(
probabilities = pd.DataFrame(index=y.index)
for model_name, model in models:
model_over_time, preds, probs = walk_forward_train_test(
model_over_time, scaler_over_time = walk_forward_train(
model_name=model_name,
model = model,
X = X if model.feature_selection == 'on' else original_X,
@@ -42,6 +42,14 @@ def train_primary_model(
retrain_every = retrain_every,
scaler = scaler
)
preds, probs = walk_forward_inference(
model_name = model_name,
models = model_over_time,
X = X if model.feature_selection == 'on' else original_X,
expanding_window = expanding_window,
window_size = sliding_window_size,
scalers = scaler_over_time
)
assert len(preds) == len(y)
result = evaluate_predictions(
+60 -32
View File
@@ -3,24 +3,24 @@ from models.base import Model
import numpy as np
from utils.helpers import get_first_valid_return_index
from tqdm import tqdm
from sklearn.preprocessing import MinMaxScaler, Normalizer, StandardScaler
from typing import Union
from sklearn.base import clone
def walk_forward_train_test(
model_name: str,
model: Model,
X: pd.DataFrame,
y: pd.Series,
target_returns: pd.Series,
expanding_window: bool,
window_size: int,
retrain_every: int,
scaler,
) -> tuple[pd.Series, pd.Series, pd.DataFrame]:
def walk_forward_train(
model_name: str,
model: Model,
X: pd.DataFrame,
y: pd.Series,
target_returns: pd.Series,
expanding_window: bool,
window_size: int,
retrain_every: int,
scaler: Union[MinMaxScaler, Normalizer, StandardScaler],
) -> tuple[pd.Series, pd.Series]:
assert len(X) == len(y)
predictions = pd.Series(index=y.index).rename(model_name)
probabilities = pd.DataFrame(index=y.index)
models = pd.Series(index=y.index).rename(model_name)
scalers = pd.Series(index=y.index).rename("scaler_" + model_name)
first_nonzero_return = max(get_first_valid_return_index(target_returns), get_first_valid_return_index(X.iloc[:,0]), get_first_valid_return_index(y))
train_from = first_nonzero_return + window_size + 1
@@ -29,10 +29,8 @@ def walk_forward_train_test(
if model.only_column is not None:
X = X[[column for column in X.columns if model.only_column in column]]
is_scaling_on = scaler is not None and model.data_scaling == 'scaled'
is_scaling_on = model.data_scaling == 'scaled'
if is_scaling_on:
scaler = clone(scaler)
@@ -47,39 +45,71 @@ def walk_forward_train_test(
train_window_end = index - 1
current_scaler = None
if is_scaling_on:
# We need to fit on the expanding window data slice
# This is our only way to avoid lookahead bias
current_scaler = clone(scaler)
X_expanding_window = X[first_nonzero_return:train_window_end]
scaler.fit(X_expanding_window.values)
current_scaler.fit(X_expanding_window.values)
X_slice = X[train_window_start:train_window_end]
y_slice = y[train_window_start:train_window_end]
X_slice = X[train_window_start:train_window_end].to_numpy()
y_slice = y[train_window_start:train_window_end].to_numpy()
if is_scaling_on:
X_slice = scaler.transform(X_slice.values)
else:
X_slice = X_slice.to_numpy()
X_slice = current_scaler.transform(X_slice)
current_model = model.clone()
current_model.initialize_network(input_dim = len(X_slice[0]), output_dim=1)
current_model.fit(X_slice, y_slice.to_numpy())
current_model.fit(X_slice, y_slice)
iterations_before_retrain = retrain_every
else:
current_model = models[index-1]
models[index] = current_model
scalers[index] = current_scaler
if model.predict_window_size == 'window_size':
iterations_before_retrain -= 1
return models, scalers
def walk_forward_inference(
model_name: str,
models: pd.Series,
scalers: pd.Series,
X: pd.DataFrame,
expanding_window: bool,
window_size: int,
) -> tuple[pd.Series, pd.DataFrame]:
predictions = pd.Series(index=X.index).rename(model_name)
probabilities = pd.DataFrame(index=X.index)
first_nonzero_return = get_first_valid_return_index(models)
train_from = first_nonzero_return
train_till = X.shape[0]
first_model = models[first_nonzero_return]
if first_model.only_column is not None:
X = X[[column for column in X.columns if first_model.only_column in column]]
is_scaling_on = first_model.data_scaling == 'scaled'
for index in tqdm(range(train_from, train_till)):
if expanding_window:
train_window_start = first_nonzero_return
else:
train_window_start = index - window_size - 1
current_model = models[index]
curren_scaler = scalers[index]
if current_model.predict_window_size == 'window_size':
next_timestep = X.iloc[train_window_start:index].to_numpy()#.reshape(1, -1)
else:
next_timestep = X.iloc[index].to_numpy().reshape(1, -1)
if is_scaling_on:
next_timestep = scaler.transform(next_timestep)
next_timestep = curren_scaler.transform(next_timestep)
prediction, probs = current_model.predict(next_timestep)
predictions[index] = prediction
@@ -87,6 +117,4 @@ def walk_forward_train_test(
probabilities = probabilities.reindex(columns = ["prob_" + str(num) for num in range(0, len(probs.T))])
probabilities.iloc[index] = probs
iterations_before_retrain -= 1
return models, predictions, probabilities
return predictions, probabilities
+3 -3
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@@ -1,8 +1,8 @@
from sklearn.preprocessing import MinMaxScaler, Normalizer, StandardScaler
from typing import Optional, Union
from typing import Union
from utils.types import ScalerTypes
def get_scaler(type: ScalerTypes) -> Optional[Union[MinMaxScaler, Normalizer, StandardScaler]]:
def get_scaler(type: ScalerTypes) -> Union[MinMaxScaler, Normalizer, StandardScaler]:
if type == 'normalize':
return Normalizer()
elif type == 'minmax':
@@ -10,4 +10,4 @@ def get_scaler(type: ScalerTypes) -> Optional[Union[MinMaxScaler, Normalizer, St
elif type == 'standardize':
return StandardScaler()
else:
return None
raise Exception("Scaler type not supported")