Files
NexQuant/rdagent/components/coder/data_science/model/__init__.py
T
you-n-g 7f4c2d18c6 feat: refactor for general data science (#498)
* refine ds modal for more cases: eval and es

* update model template

* prompts for model and ensemble

* fix a bug

* fix a bug

* init: ds workflow evovingstrategy

* Adding ensemble (#505)

* Initial Draft

* Updating logic for init

* Revising

* Successful Testing

* Updating to use the latest & right class

* bug: bug-fixing for testing

* data science loop changes

* data science loop base

* ds loop feedback

* fix

* remove measure_time because it's duplicated (in LoopBase)

* add the knowledge query for data_loader & feature

* edit ds workflow evaluator

* data_loader bug fix

* stop evolving when all tasks completed

* llm app change

* fix break all complete strategy

* Adding queried knowledge (#508)

Co-authored-by: XianBW <36835909+XianBW@users.noreply.github.com>

* fix loop bug

* ds workflow evaluator; test; refine prompts

* workflow spec

* fix ci

* feature task changes

* ds loop change

* fix a bug in feat

* add query knowledge for model and workflow

* llm_debug info(for show) using pickle instead of json

* remove NextLoopException

* loop change

* coder raise CoderError when all sub_tasks failed

* rename code_dict to file_dict in FBWorkspace

* add CoSTEER unittest

* now show self.version in Task.get_task_information(), simplify CoSTEER sub tasks definition

* remove some properties in ModelTask, add model_type in it.

* fix llm app bug

* llm web app bug fix

* ds loop bug fix

* fix: give component code to feature&ens eval

* loop catch error bug

* rename load_from_raw_data to load_data

* feat: Add debug data creation functionality for data science scenarios

* support local folder (#511)

* support local folder

* remove unnecessary random

* KaggleScen Subclass

* small fix

* use template for style description

* update default scen to kaggle

* update sample data script

* make sure frac < 1

* fix a bug

* feature spec changes

* fix

* changeimport order

* clear unnecessary std outputs

* fix a typo

* create sample folder after unzip kaggle data

* feature/model test script update

* Align the data types across modules.

* fix a bug in model eval

* show line number

* move sample entry point to app

* spec & model prompt changes

* Refine the competition specification to address the data type problem and the coherence issue.

* fix some bugs

* add file filter in FBworkspace.code property

* support non-binary prediction

* avoid too much warnings

* fix a bug in ensemble module

* filtered the knowledge query in all modules

* delete RAG in idea proposal

* refine the code in ensemble

* show exp workspace in llm_st

* exp_gen bug fix

* feedback bug fix

* use `feature` instead of `feat01`

* Trace & method of judging if exp is completed change

* fix a bug in package calling and execute ci

* fix code

* bug fix

* bug fix

* fix a bug

* fix some bugs

* fix a bug

* refactor: Enhance error handling and feedback in data science loop

* support different use_azure on chat and embedding models

* multi-model proposal logic

* fix a small syntax error

* loopBase and some changes

* ensemble scores change

* fbworkspace.code -> .all_codes

* use all model codes in workflow coder

* check scores.csv's keys(model_names)

* model name changes

* add a todo in  ensemble test

* sota_exp changes

* give model info in exp gen

* add runner time limit

* config using debug data or not in evals

* exp to feedback base

* add feature code when writing model task

* small problem

* copying during sampling

* update

* refactor: Simplify code handling and improve workspace management

* model part output fix

* print model's execution time

* bug fix

* ensemble test fix

* ens small change

* ens_test bug fix

* Refine partial expansion logic to display only a few subfolders when their structure is uniform, improving readability in nested directories.

* several update on prompts

* sample subfolders

* Filter the stdout after code execution to remove irrelevant information e.g. progress bars, whitespace characters, excessive line breaks.

* Add some more prompts and comments

* several update on the first init rounds

* model timeout as error

* fix pattern of getting model codes in workspace

* small bux fix on model prompts

* remove get_code_with_key since we have regex pattern

* fix: Correct tqdm progress bar update logic in LoopBase class

* feat: Add diff generation and enhance feedback mechanism in data science loop

* update some fix to model and workflow prompts

* refine the logic of progress bar filter

* add last_successful_exp in exp_gen

* fix a one line bug

* add a hint in prompt

* fix data sample for bms

* fix data sample for bms

* hypothesis small fix

* crawler readme update

* fix component gen

* fix bug

* annotation change

* load description.md if it exists

* refactor: Simplify SOTA description handling in feedback and prompts

* refactor: Use shared templates for feedback and experiment descriptions

* change webapp for model codes changes

* update proposal

* add timeout message for docker run output

* fix

* refine the code in docker time processing

* use .shape instead of len() when do shape eval

* won't change size during iteration

* support bson sample

* sample support jsonl and bson

* add former_code to coder prompts

* a little speed us in debug data creating

* filter progress bar when eval ens and main

* avoid costeer makes no change to former code

* fix several log error

* add timeout judge threshold

* fix some bugs in the evaluation of component output shapes

* File structure for supporting litellm (#517)

Co-authored-by: Young <afe.young@gmail.com>

* ignore submission and show processing

* ignore submission and show processing

* add efficiency notice

* refactor: Enhance error message with detailed feedback summary

* refactor: Simplify component handling in DSExpGen class

* refactor: Update code structure and add docstring for clarity

* reserve one sample to each label in data sampling

* add Evaluation info

* refine costeer code to avoid giving same code twice

* use raw_description as plain text

* add a prompt hint to avoid same dict key

* model task name bug in first model exp gen

* fix a typo

* add some debug info in costeer tests

* task init change

* enhance data sampling

* refine the code in data_loader

* more reasonable loop

* fix a bug in data folder description

* add error msg & traceback to execution feedback

* fix llm error msg detection

* add task information to costeer eval & add cache to docker run(use zipfile to store the whole workspace)

* fix CI first round

* fix CI second round

* use txt to store test script to avoid pytest

* remove zipfile in requirements

* add azure.identity to requirements

* ignore debug web page

* component test changes

* remove redundent task_desc in model coder

* feat: Add APE module and prompts for automated prompt engineering

* fix: Update .gitignore and improve text formatting in eval.py

* refactor: Update print output and improve code comments and imports

* style: Fix string formatting and import order in ape.py and fmt.py

* exclude ape

* add a data folder notice

* reduce unnecessary output to stdout

* refine the code of describe_data_folder

* fix ci

* style: streamlit style update (#522)

* streamlit style update

* fix import

* fix format

* fix llm_st loop progress bar

* debugapp small change

* fix model str

* refine some prompts

* fix model str

* fix CI

* refine the logic associated with the data_folder

* fix ci

* small change

* set filter_progress_bar as default in execute

* model proposal with workflow

* add submission check in workflow eval

* fix bug

* small change

* fix CI

* fix CI

* refactor: Move generate_diff to utils and update DSExpGen logic

* more reasonable prompt describing metric direction

* fix a minor jinja2 bug

* quick fix exp_gen bugs

* fix the following bug

* fix

* fix some bugs

* remove workflow from model

* add pending_tasks_list in data science to enable coding model and workflow

* refine the code for handling JSON-formatted data descriptions

* assert with information

* ensure correct csv file name

* add logging to help record the output

* log competition

* add log tag for debug llm app

* test: Test ds refactor ll (#523)

* fix bugs to former scenario

* fix a bug because coding in rdloop changed

* fix the bug when feedback gets no hypothesis

* fix trace structure

* change all trace hist when merging hypothesis to experiments

* ignore some error in ruff

* fix kaggle scenario bugs

* refine one line

* another bug

* another small bug

* fix ui bugs

* chage kaggle  train.py path

---------

Co-authored-by: Xu Yang <peteryang@vip.qq.com>

* fix CI

* Update rdagent/app/data_science/loop.py

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

* add samplecsv into spec prompts

* fix CI

---------

Co-authored-by: TPLin22 <tplin2@163.com>
Co-authored-by: yuanteli <1957922024@qq.com>
Co-authored-by: Xisen Wang <118058822+xisen-w@users.noreply.github.com>
Co-authored-by: Bowen Xian <xianbowen@outlook.com>
Co-authored-by: Xu Yang <peteryang@vip.qq.com>
Co-authored-by: XianBW <36835909+XianBW@users.noreply.github.com>
Co-authored-by: Tim <illking@foxmail.com>
Co-authored-by: 炼金术师华华 <37462254+YeewahChan@users.noreply.github.com>
Co-authored-by: Linlang <30293408+SunsetWolf@users.noreply.github.com>
Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
2025-01-17 22:53:05 +08:00

145 lines
6.0 KiB
Python

import json
from pathlib import Path
from jinja2 import Environment, StrictUndefined
from rdagent.components.coder.CoSTEER import CoSTEER
from rdagent.components.coder.CoSTEER.config import CoSTEER_SETTINGS
from rdagent.components.coder.CoSTEER.evaluators import CoSTEERMultiEvaluator
from rdagent.components.coder.CoSTEER.evolving_strategy import (
MultiProcessEvolvingStrategy,
)
from rdagent.components.coder.CoSTEER.knowledge_management import (
CoSTEERQueriedKnowledge,
)
from rdagent.components.coder.data_science.model.eval import (
ModelGeneralCaseSpecEvaluator,
)
from rdagent.components.coder.data_science.model.exp import ModelTask
from rdagent.core.exception import CoderError
from rdagent.core.experiment import FBWorkspace
from rdagent.core.scenario import Scenario
from rdagent.oai.llm_utils import APIBackend
from rdagent.utils.agent.ret import BatchEditOut
from rdagent.utils.agent.tpl import T
class ModelMultiProcessEvolvingStrategy(MultiProcessEvolvingStrategy):
def implement_one_task(
self,
target_task: ModelTask,
queried_knowledge: CoSTEERQueriedKnowledge | None = None,
workspace: FBWorkspace | None = None,
) -> dict[str, str]:
model_information_str = target_task.get_task_information()
# 1. query
queried_similar_successful_knowledge = (
queried_knowledge.task_to_similar_task_successful_knowledge[model_information_str]
if queried_knowledge is not None
else []
)
queried_former_failed_knowledge = (
queried_knowledge.task_to_former_failed_traces[model_information_str]
if queried_knowledge is not None
else []
)
latest_code_feedback = [
knowledge.feedback
for knowledge in queried_former_failed_knowledge[0]
if knowledge.implementation.file_dict.get(f"{target_task.name}.py") is not None
and knowledge.implementation.file_dict.get(f"{target_task.name}.py")
== workspace.file_dict.get(f"{target_task.name}.py")
]
if len(latest_code_feedback) > 0:
queried_former_failed_knowledge = (
[
knowledge
for knowledge in queried_former_failed_knowledge[0]
if knowledge.implementation.file_dict.get(f"{target_task.name}.py")
!= workspace.file_dict.get(f"{target_task.name}.py")
],
queried_former_failed_knowledge[1],
)
# 2. code
system_prompt = T(".prompts:model_coder.system").r(
task_desc=model_information_str,
data_loader_code=workspace.file_dict.get("load_data.py"),
feature_code=workspace.file_dict["feature.py"],
queried_similar_successful_knowledge=queried_similar_successful_knowledge,
queried_former_failed_knowledge=queried_former_failed_knowledge[0],
out_spec=BatchEditOut.get_spec(),
)
# user_prompt = T(".prompts:model_coder.user").r(
# model_spec=workspace.file_dict["spec/model.md"],
# feature_code=workspace.file_dict["feature.py"],
# latest_code=workspace.file_dict.get(f"{target_task.name}.py", None),
# )
# We want to use a simpler way to
user_prompt = T(".prompts:model_coder.user_general").r(
model_spec=workspace.file_dict["spec/model.md"],
workspace_code=workspace.get_codes(
r"^model_(?!test)\w+\.py$"
), # TODO: If we have high failure rate here, we should clean this step with less information.
latest_code_feedback=latest_code_feedback[0] if len(latest_code_feedback) > 0 else None,
)
for _ in range(5):
batch_edit = BatchEditOut.extract_output(
APIBackend().build_messages_and_create_chat_completion(
user_prompt=user_prompt,
system_prompt=system_prompt,
json_mode=BatchEditOut.json_mode,
)
)
# 3. post process to align file name to the task name
batch_edit = {
(f"{target_task.name}.py" if value != "__DEL__" and key != f"{target_task.name}.py" else key): value
for key, value in batch_edit.items()
}
if batch_edit[f"{target_task.name}.py"] != "__DEL__" and batch_edit[
f"{target_task.name}.py"
] != workspace.file_dict.get(f"{target_task.name}.py"):
break
else:
user_prompt = user_prompt + "\nPlease avoid generating same code to former code!"
else:
raise CoderError("Failed to generate a new model code.")
return batch_edit
def assign_code_list_to_evo(self, code_list: list[dict[str, str]], evo):
"""
Assign the code list to the evolving item.
The code list is aligned with the evolving item's sub-tasks.
If a task is not implemented, put a None in the list.
"""
for index in range(len(evo.sub_tasks)):
if code_list[index] is None:
continue
if evo.sub_workspace_list[index] is None:
# evo.sub_workspace_list[index] = FBWorkspace(target_task=evo.sub_tasks[index])
evo.sub_workspace_list[index] = evo.experiment_workspace
evo.sub_workspace_list[index].inject_files(**code_list[index])
return evo
class ModelCoSTEER(CoSTEER):
def __init__(
self,
scen: Scenario,
*args,
**kwargs,
) -> None:
eva = CoSTEERMultiEvaluator(
ModelGeneralCaseSpecEvaluator(scen=scen), scen=scen
) # Please specify whether you agree running your eva in parallel or not
# eva = ModelGeneralCaseSpecEvaluator(scen=scen)
es = ModelMultiProcessEvolvingStrategy(scen=scen, settings=CoSTEER_SETTINGS)
super().__init__(*args, settings=CoSTEER_SETTINGS, eva=eva, es=es, evolving_version=2, scen=scen, **kwargs)