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* refine ds modal for more cases: eval and es * update model template * prompts for model and ensemble * fix a bug * fix a bug * init: ds workflow evovingstrategy * Adding ensemble (#505) * Initial Draft * Updating logic for init * Revising * Successful Testing * Updating to use the latest & right class * bug: bug-fixing for testing * data science loop changes * data science loop base * ds loop feedback * fix * remove measure_time because it's duplicated (in LoopBase) * add the knowledge query for data_loader & feature * edit ds workflow evaluator * data_loader bug fix * stop evolving when all tasks completed * llm app change * fix break all complete strategy * Adding queried knowledge (#508) Co-authored-by: XianBW <36835909+XianBW@users.noreply.github.com> * fix loop bug * ds workflow evaluator; test; refine prompts * workflow spec * fix ci * feature task changes * ds loop change * fix a bug in feat * add query knowledge for model and workflow * llm_debug info(for show) using pickle instead of json * remove NextLoopException * loop change * coder raise CoderError when all sub_tasks failed * rename code_dict to file_dict in FBWorkspace * add CoSTEER unittest * now show self.version in Task.get_task_information(), simplify CoSTEER sub tasks definition * remove some properties in ModelTask, add model_type in it. * fix llm app bug * llm web app bug fix * ds loop bug fix * fix: give component code to feature&ens eval * loop catch error bug * rename load_from_raw_data to load_data * feat: Add debug data creation functionality for data science scenarios * support local folder (#511) * support local folder * remove unnecessary random * KaggleScen Subclass * small fix * use template for style description * update default scen to kaggle * update sample data script * make sure frac < 1 * fix a bug * feature spec changes * fix * changeimport order * clear unnecessary std outputs * fix a typo * create sample folder after unzip kaggle data * feature/model test script update * Align the data types across modules. * fix a bug in model eval * show line number * move sample entry point to app * spec & model prompt changes * Refine the competition specification to address the data type problem and the coherence issue. * fix some bugs * add file filter in FBworkspace.code property * support non-binary prediction * avoid too much warnings * fix a bug in ensemble module * filtered the knowledge query in all modules * delete RAG in idea proposal * refine the code in ensemble * show exp workspace in llm_st * exp_gen bug fix * feedback bug fix * use `feature` instead of `feat01` * Trace & method of judging if exp is completed change * fix a bug in package calling and execute ci * fix code * bug fix * bug fix * fix a bug * fix some bugs * fix a bug * refactor: Enhance error handling and feedback in data science loop * support different use_azure on chat and embedding models * multi-model proposal logic * fix a small syntax error * loopBase and some changes * ensemble scores change * fbworkspace.code -> .all_codes * use all model codes in workflow coder * check scores.csv's keys(model_names) * model name changes * add a todo in ensemble test * sota_exp changes * give model info in exp gen * add runner time limit * config using debug data or not in evals * exp to feedback base * add feature code when writing model task * small problem * copying during sampling * update * refactor: Simplify code handling and improve workspace management * model part output fix * print model's execution time * bug fix * ensemble test fix * ens small change * ens_test bug fix * Refine partial expansion logic to display only a few subfolders when their structure is uniform, improving readability in nested directories. * several update on prompts * sample subfolders * Filter the stdout after code execution to remove irrelevant information e.g. progress bars, whitespace characters, excessive line breaks. * Add some more prompts and comments * several update on the first init rounds * model timeout as error * fix pattern of getting model codes in workspace * small bux fix on model prompts * remove get_code_with_key since we have regex pattern * fix: Correct tqdm progress bar update logic in LoopBase class * feat: Add diff generation and enhance feedback mechanism in data science loop * update some fix to model and workflow prompts * refine the logic of progress bar filter * add last_successful_exp in exp_gen * fix a one line bug * add a hint in prompt * fix data sample for bms * fix data sample for bms * hypothesis small fix * crawler readme update * fix component gen * fix bug * annotation change * load description.md if it exists * refactor: Simplify SOTA description handling in feedback and prompts * refactor: Use shared templates for feedback and experiment descriptions * change webapp for model codes changes * update proposal * add timeout message for docker run output * fix * refine the code in docker time processing * use .shape instead of len() when do shape eval * won't change size during iteration * support bson sample * sample support jsonl and bson * add former_code to coder prompts * a little speed us in debug data creating * filter progress bar when eval ens and main * avoid costeer makes no change to former code * fix several log error * add timeout judge threshold * fix some bugs in the evaluation of component output shapes * File structure for supporting litellm (#517) Co-authored-by: Young <afe.young@gmail.com> * ignore submission and show processing * ignore submission and show processing * add efficiency notice * refactor: Enhance error message with detailed feedback summary * refactor: Simplify component handling in DSExpGen class * refactor: Update code structure and add docstring for clarity * reserve one sample to each label in data sampling * add Evaluation info * refine costeer code to avoid giving same code twice * use raw_description as plain text * add a prompt hint to avoid same dict key * model task name bug in first model exp gen * fix a typo * add some debug info in costeer tests * task init change * enhance data sampling * refine the code in data_loader * more reasonable loop * fix a bug in data folder description * add error msg & traceback to execution feedback * fix llm error msg detection * add task information to costeer eval & add cache to docker run(use zipfile to store the whole workspace) * fix CI first round * fix CI second round * use txt to store test script to avoid pytest * remove zipfile in requirements * add azure.identity to requirements * ignore debug web page * component test changes * remove redundent task_desc in model coder * feat: Add APE module and prompts for automated prompt engineering * fix: Update .gitignore and improve text formatting in eval.py * refactor: Update print output and improve code comments and imports * style: Fix string formatting and import order in ape.py and fmt.py * exclude ape * add a data folder notice * reduce unnecessary output to stdout * refine the code of describe_data_folder * fix ci * style: streamlit style update (#522) * streamlit style update * fix import * fix format * fix llm_st loop progress bar * debugapp small change * fix model str * refine some prompts * fix model str * fix CI * refine the logic associated with the data_folder * fix ci * small change * set filter_progress_bar as default in execute * model proposal with workflow * add submission check in workflow eval * fix bug * small change * fix CI * fix CI * refactor: Move generate_diff to utils and update DSExpGen logic * more reasonable prompt describing metric direction * fix a minor jinja2 bug * quick fix exp_gen bugs * fix the following bug * fix * fix some bugs * remove workflow from model * add pending_tasks_list in data science to enable coding model and workflow * refine the code for handling JSON-formatted data descriptions * assert with information * ensure correct csv file name * add logging to help record the output * log competition * add log tag for debug llm app * test: Test ds refactor ll (#523) * fix bugs to former scenario * fix a bug because coding in rdloop changed * fix the bug when feedback gets no hypothesis * fix trace structure * change all trace hist when merging hypothesis to experiments * ignore some error in ruff * fix kaggle scenario bugs * refine one line * another bug * another small bug * fix ui bugs * chage kaggle train.py path --------- Co-authored-by: Xu Yang <peteryang@vip.qq.com> * fix CI * Update rdagent/app/data_science/loop.py Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com> * add samplecsv into spec prompts * fix CI --------- Co-authored-by: TPLin22 <tplin2@163.com> Co-authored-by: yuanteli <1957922024@qq.com> Co-authored-by: Xisen Wang <118058822+xisen-w@users.noreply.github.com> Co-authored-by: Bowen Xian <xianbowen@outlook.com> Co-authored-by: Xu Yang <peteryang@vip.qq.com> Co-authored-by: XianBW <36835909+XianBW@users.noreply.github.com> Co-authored-by: Tim <illking@foxmail.com> Co-authored-by: 炼金术师华华 <37462254+YeewahChan@users.noreply.github.com> Co-authored-by: Linlang <30293408+SunsetWolf@users.noreply.github.com> Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
226 lines
9.1 KiB
Python
226 lines
9.1 KiB
Python
from __future__ import annotations
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import subprocess
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import uuid
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from pathlib import Path
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from typing import Tuple, Union
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import pandas as pd
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from filelock import FileLock
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from rdagent.app.kaggle.conf import KAGGLE_IMPLEMENT_SETTING
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from rdagent.components.coder.CoSTEER.task import CoSTEERTask
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from rdagent.components.coder.factor_coder.config import FACTOR_COSTEER_SETTINGS
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from rdagent.core.exception import CodeFormatError, CustomRuntimeError, NoOutputError
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from rdagent.core.experiment import Experiment, FBWorkspace
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from rdagent.core.utils import cache_with_pickle
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from rdagent.oai.llm_utils import md5_hash
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class FactorTask(CoSTEERTask):
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# TODO: generalized the attributes into the Task
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# - factor_* -> *
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def __init__(
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self,
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factor_name,
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factor_description,
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factor_formulation,
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*args,
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variables: dict = {},
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resource: str = None,
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factor_implementation: bool = False,
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**kwargs,
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) -> None:
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self.factor_name = (
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factor_name # TODO: remove it in the later version. Keep it only for pickle version compatibility
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)
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self.factor_formulation = factor_formulation
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self.variables = variables
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self.factor_resources = resource
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self.factor_implementation = factor_implementation
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super().__init__(name=factor_name, description=factor_description, *args, **kwargs)
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@property
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def factor_description(self):
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"""for compatibility"""
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return self.description
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def get_task_information(self):
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return f"""factor_name: {self.factor_name}
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factor_description: {self.factor_description}
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factor_formulation: {self.factor_formulation}
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variables: {str(self.variables)}"""
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def get_task_information_and_implementation_result(self):
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return {
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"factor_name": self.factor_name,
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"factor_description": self.factor_description,
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"factor_formulation": self.factor_formulation,
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"variables": str(self.variables),
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"factor_implementation": str(self.factor_implementation),
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}
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@staticmethod
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def from_dict(dict):
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return FactorTask(**dict)
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def __repr__(self) -> str:
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return f"<{self.__class__.__name__}[{self.factor_name}]>"
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class FactorFBWorkspace(FBWorkspace):
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"""
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This class is used to implement a factor by writing the code to a file.
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Input data and output factor value are also written to files.
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"""
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# TODO: (Xiao) think raising errors may get better information for processing
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FB_EXEC_SUCCESS = "Execution succeeded without error."
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FB_CODE_NOT_SET = "code is not set."
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FB_EXECUTION_SUCCEEDED = "Execution succeeded without error."
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FB_OUTPUT_FILE_NOT_FOUND = "\nExpected output file not found."
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FB_OUTPUT_FILE_FOUND = "\nExpected output file found."
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def __init__(
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self,
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*args,
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raise_exception: bool = False,
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**kwargs,
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) -> None:
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super().__init__(*args, **kwargs)
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self.raise_exception = raise_exception
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def hash_func(self, data_type: str = "Debug") -> str:
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return (
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md5_hash(data_type + self.file_dict["factor.py"])
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if ("factor.py" in self.file_dict and not self.raise_exception)
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else None
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)
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@cache_with_pickle(hash_func)
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def execute(self, data_type: str = "Debug") -> Tuple[str, pd.DataFrame]:
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"""
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execute the implementation and get the factor value by the following steps:
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1. make the directory in workspace path
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2. write the code to the file in the workspace path
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3. link all the source data to the workspace path folder
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if call_factor_py is True:
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4. execute the code
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else:
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4. generate a script from template to import the factor.py dump get the factor value to result.h5
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5. read the factor value from the output file in the workspace path folder
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returns the execution feedback as a string and the factor value as a pandas dataframe
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Regarding the cache mechanism:
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1. We will store the function's return value to ensure it behaves as expected.
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- The cached information will include a tuple with the following: (execution_feedback, executed_factor_value_dataframe, Optional[Exception])
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"""
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super().execute()
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if self.file_dict is None or "factor.py" not in self.file_dict:
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if self.raise_exception:
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raise CodeFormatError(self.FB_CODE_NOT_SET)
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else:
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return self.FB_CODE_NOT_SET, None
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with FileLock(self.workspace_path / "execution.lock"):
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if self.target_task.version == 1:
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source_data_path = (
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Path(
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FACTOR_COSTEER_SETTINGS.data_folder_debug,
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)
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if data_type == "Debug" # FIXME: (yx) don't think we should use a debug tag for this.
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else Path(
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FACTOR_COSTEER_SETTINGS.data_folder,
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)
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)
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elif self.target_task.version == 2:
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# TODO you can change the name of the data folder for a better understanding
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source_data_path = Path(KAGGLE_IMPLEMENT_SETTING.local_data_path) / KAGGLE_IMPLEMENT_SETTING.competition
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source_data_path.mkdir(exist_ok=True, parents=True)
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code_path = self.workspace_path / f"factor.py"
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self.link_all_files_in_folder_to_workspace(source_data_path, self.workspace_path)
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execution_feedback = self.FB_EXECUTION_SUCCEEDED
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execution_success = False
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execution_error = None
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if self.target_task.version == 1:
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execution_code_path = code_path
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elif self.target_task.version == 2:
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execution_code_path = self.workspace_path / f"{uuid.uuid4()}.py"
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execution_code_path.write_text((Path(__file__).parent / "factor_execution_template.txt").read_text())
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try:
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subprocess.check_output(
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f"{FACTOR_COSTEER_SETTINGS.python_bin} {execution_code_path}",
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shell=True,
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cwd=self.workspace_path,
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stderr=subprocess.STDOUT,
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timeout=FACTOR_COSTEER_SETTINGS.file_based_execution_timeout,
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)
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execution_success = True
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except subprocess.CalledProcessError as e:
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import site
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execution_feedback = (
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e.output.decode()
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.replace(str(execution_code_path.parent.absolute()), r"/path/to")
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.replace(str(site.getsitepackages()[0]), r"/path/to/site-packages")
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)
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if len(execution_feedback) > 2000:
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execution_feedback = (
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execution_feedback[:1000] + "....hidden long error message...." + execution_feedback[-1000:]
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)
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if self.raise_exception:
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raise CustomRuntimeError(execution_feedback)
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else:
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execution_error = CustomRuntimeError(execution_feedback)
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except subprocess.TimeoutExpired:
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execution_feedback += f"Execution timeout error and the timeout is set to {FACTOR_COSTEER_SETTINGS.file_based_execution_timeout} seconds."
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if self.raise_exception:
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raise CustomRuntimeError(execution_feedback)
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else:
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execution_error = CustomRuntimeError(execution_feedback)
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workspace_output_file_path = self.workspace_path / "result.h5"
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if workspace_output_file_path.exists() and execution_success:
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try:
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executed_factor_value_dataframe = pd.read_hdf(workspace_output_file_path)
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execution_feedback += self.FB_OUTPUT_FILE_FOUND
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except Exception as e:
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execution_feedback += f"Error found when reading hdf file: {e}"[:1000]
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executed_factor_value_dataframe = None
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else:
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execution_feedback += self.FB_OUTPUT_FILE_NOT_FOUND
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executed_factor_value_dataframe = None
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if self.raise_exception:
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raise NoOutputError(execution_feedback)
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else:
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execution_error = NoOutputError(execution_feedback)
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return execution_feedback, executed_factor_value_dataframe
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def __str__(self) -> str:
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# NOTE:
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# If the code cache works, the workspace will be None.
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return f"File Factor[{self.target_task.factor_name}]: {self.workspace_path}"
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def __repr__(self) -> str:
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return self.__str__()
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@staticmethod
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def from_folder(task: FactorTask, path: Union[str, Path], **kwargs):
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path = Path(path)
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code_dict = {}
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for file_path in path.iterdir():
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if file_path.suffix == ".py":
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code_dict[file_path.name] = file_path.read_text()
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return FactorFBWorkspace(target_task=task, code_dict=code_dict, **kwargs)
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FactorExperiment = Experiment
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FeatureExperiment = Experiment
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