Files
NexQuant/rdagent/app/data_science/loop.py
T
you-n-g 7f4c2d18c6 feat: refactor for general data science (#498)
* refine ds modal for more cases: eval and es

* update model template

* prompts for model and ensemble

* fix a bug

* fix a bug

* init: ds workflow evovingstrategy

* Adding ensemble (#505)

* Initial Draft

* Updating logic for init

* Revising

* Successful Testing

* Updating to use the latest & right class

* bug: bug-fixing for testing

* data science loop changes

* data science loop base

* ds loop feedback

* fix

* remove measure_time because it's duplicated (in LoopBase)

* add the knowledge query for data_loader & feature

* edit ds workflow evaluator

* data_loader bug fix

* stop evolving when all tasks completed

* llm app change

* fix break all complete strategy

* Adding queried knowledge (#508)

Co-authored-by: XianBW <36835909+XianBW@users.noreply.github.com>

* fix loop bug

* ds workflow evaluator; test; refine prompts

* workflow spec

* fix ci

* feature task changes

* ds loop change

* fix a bug in feat

* add query knowledge for model and workflow

* llm_debug info(for show) using pickle instead of json

* remove NextLoopException

* loop change

* coder raise CoderError when all sub_tasks failed

* rename code_dict to file_dict in FBWorkspace

* add CoSTEER unittest

* now show self.version in Task.get_task_information(), simplify CoSTEER sub tasks definition

* remove some properties in ModelTask, add model_type in it.

* fix llm app bug

* llm web app bug fix

* ds loop bug fix

* fix: give component code to feature&ens eval

* loop catch error bug

* rename load_from_raw_data to load_data

* feat: Add debug data creation functionality for data science scenarios

* support local folder (#511)

* support local folder

* remove unnecessary random

* KaggleScen Subclass

* small fix

* use template for style description

* update default scen to kaggle

* update sample data script

* make sure frac < 1

* fix a bug

* feature spec changes

* fix

* changeimport order

* clear unnecessary std outputs

* fix a typo

* create sample folder after unzip kaggle data

* feature/model test script update

* Align the data types across modules.

* fix a bug in model eval

* show line number

* move sample entry point to app

* spec & model prompt changes

* Refine the competition specification to address the data type problem and the coherence issue.

* fix some bugs

* add file filter in FBworkspace.code property

* support non-binary prediction

* avoid too much warnings

* fix a bug in ensemble module

* filtered the knowledge query in all modules

* delete RAG in idea proposal

* refine the code in ensemble

* show exp workspace in llm_st

* exp_gen bug fix

* feedback bug fix

* use `feature` instead of `feat01`

* Trace & method of judging if exp is completed change

* fix a bug in package calling and execute ci

* fix code

* bug fix

* bug fix

* fix a bug

* fix some bugs

* fix a bug

* refactor: Enhance error handling and feedback in data science loop

* support different use_azure on chat and embedding models

* multi-model proposal logic

* fix a small syntax error

* loopBase and some changes

* ensemble scores change

* fbworkspace.code -> .all_codes

* use all model codes in workflow coder

* check scores.csv's keys(model_names)

* model name changes

* add a todo in  ensemble test

* sota_exp changes

* give model info in exp gen

* add runner time limit

* config using debug data or not in evals

* exp to feedback base

* add feature code when writing model task

* small problem

* copying during sampling

* update

* refactor: Simplify code handling and improve workspace management

* model part output fix

* print model's execution time

* bug fix

* ensemble test fix

* ens small change

* ens_test bug fix

* Refine partial expansion logic to display only a few subfolders when their structure is uniform, improving readability in nested directories.

* several update on prompts

* sample subfolders

* Filter the stdout after code execution to remove irrelevant information e.g. progress bars, whitespace characters, excessive line breaks.

* Add some more prompts and comments

* several update on the first init rounds

* model timeout as error

* fix pattern of getting model codes in workspace

* small bux fix on model prompts

* remove get_code_with_key since we have regex pattern

* fix: Correct tqdm progress bar update logic in LoopBase class

* feat: Add diff generation and enhance feedback mechanism in data science loop

* update some fix to model and workflow prompts

* refine the logic of progress bar filter

* add last_successful_exp in exp_gen

* fix a one line bug

* add a hint in prompt

* fix data sample for bms

* fix data sample for bms

* hypothesis small fix

* crawler readme update

* fix component gen

* fix bug

* annotation change

* load description.md if it exists

* refactor: Simplify SOTA description handling in feedback and prompts

* refactor: Use shared templates for feedback and experiment descriptions

* change webapp for model codes changes

* update proposal

* add timeout message for docker run output

* fix

* refine the code in docker time processing

* use .shape instead of len() when do shape eval

* won't change size during iteration

* support bson sample

* sample support jsonl and bson

* add former_code to coder prompts

* a little speed us in debug data creating

* filter progress bar when eval ens and main

* avoid costeer makes no change to former code

* fix several log error

* add timeout judge threshold

* fix some bugs in the evaluation of component output shapes

* File structure for supporting litellm (#517)

Co-authored-by: Young <afe.young@gmail.com>

* ignore submission and show processing

* ignore submission and show processing

* add efficiency notice

* refactor: Enhance error message with detailed feedback summary

* refactor: Simplify component handling in DSExpGen class

* refactor: Update code structure and add docstring for clarity

* reserve one sample to each label in data sampling

* add Evaluation info

* refine costeer code to avoid giving same code twice

* use raw_description as plain text

* add a prompt hint to avoid same dict key

* model task name bug in first model exp gen

* fix a typo

* add some debug info in costeer tests

* task init change

* enhance data sampling

* refine the code in data_loader

* more reasonable loop

* fix a bug in data folder description

* add error msg & traceback to execution feedback

* fix llm error msg detection

* add task information to costeer eval & add cache to docker run(use zipfile to store the whole workspace)

* fix CI first round

* fix CI second round

* use txt to store test script to avoid pytest

* remove zipfile in requirements

* add azure.identity to requirements

* ignore debug web page

* component test changes

* remove redundent task_desc in model coder

* feat: Add APE module and prompts for automated prompt engineering

* fix: Update .gitignore and improve text formatting in eval.py

* refactor: Update print output and improve code comments and imports

* style: Fix string formatting and import order in ape.py and fmt.py

* exclude ape

* add a data folder notice

* reduce unnecessary output to stdout

* refine the code of describe_data_folder

* fix ci

* style: streamlit style update (#522)

* streamlit style update

* fix import

* fix format

* fix llm_st loop progress bar

* debugapp small change

* fix model str

* refine some prompts

* fix model str

* fix CI

* refine the logic associated with the data_folder

* fix ci

* small change

* set filter_progress_bar as default in execute

* model proposal with workflow

* add submission check in workflow eval

* fix bug

* small change

* fix CI

* fix CI

* refactor: Move generate_diff to utils and update DSExpGen logic

* more reasonable prompt describing metric direction

* fix a minor jinja2 bug

* quick fix exp_gen bugs

* fix the following bug

* fix

* fix some bugs

* remove workflow from model

* add pending_tasks_list in data science to enable coding model and workflow

* refine the code for handling JSON-formatted data descriptions

* assert with information

* ensure correct csv file name

* add logging to help record the output

* log competition

* add log tag for debug llm app

* test: Test ds refactor ll (#523)

* fix bugs to former scenario

* fix a bug because coding in rdloop changed

* fix the bug when feedback gets no hypothesis

* fix trace structure

* change all trace hist when merging hypothesis to experiments

* ignore some error in ruff

* fix kaggle scenario bugs

* refine one line

* another bug

* another small bug

* fix ui bugs

* chage kaggle  train.py path

---------

Co-authored-by: Xu Yang <peteryang@vip.qq.com>

* fix CI

* Update rdagent/app/data_science/loop.py

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

* add samplecsv into spec prompts

* fix CI

---------

Co-authored-by: TPLin22 <tplin2@163.com>
Co-authored-by: yuanteli <1957922024@qq.com>
Co-authored-by: Xisen Wang <118058822+xisen-w@users.noreply.github.com>
Co-authored-by: Bowen Xian <xianbowen@outlook.com>
Co-authored-by: Xu Yang <peteryang@vip.qq.com>
Co-authored-by: XianBW <36835909+XianBW@users.noreply.github.com>
Co-authored-by: Tim <illking@foxmail.com>
Co-authored-by: 炼金术师华华 <37462254+YeewahChan@users.noreply.github.com>
Co-authored-by: Linlang <30293408+SunsetWolf@users.noreply.github.com>
Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
2025-01-17 22:53:05 +08:00

164 lines
6.8 KiB
Python

from pathlib import Path
from typing import Any
import fire
from rdagent.app.data_science.conf import DS_RD_SETTING
from rdagent.components.coder.data_science.ensemble import EnsembleCoSTEER
from rdagent.components.coder.data_science.feature import FeatureCoSTEER
from rdagent.components.coder.data_science.model import ModelCoSTEER
from rdagent.components.coder.data_science.raw_data_loader import DataLoaderCoSTEER
from rdagent.components.coder.data_science.workflow import WorkflowCoSTEER
from rdagent.components.workflow.conf import BasePropSetting
from rdagent.components.workflow.rd_loop import RDLoop
from rdagent.core.exception import CoderError, RunnerError
from rdagent.core.proposal import ExperimentFeedback, HypothesisFeedback
from rdagent.core.scenario import Scenario
from rdagent.core.utils import import_class
from rdagent.log import rdagent_logger as logger
from rdagent.scenarios.data_science.dev.feedback import DSExperiment2Feedback
from rdagent.scenarios.data_science.dev.runner import DSRunner
from rdagent.scenarios.data_science.experiment.experiment import DSExperiment
from rdagent.scenarios.data_science.proposal.exp_gen import DSExpGen, DSTrace
from rdagent.scenarios.kaggle.kaggle_crawler import download_data
class DataScienceRDLoop(RDLoop):
skip_loop_error = (CoderError, RunnerError)
def __init__(self, PROP_SETTING: BasePropSetting):
logger.log_object(PROP_SETTING.competition, tag="competition")
scen: Scenario = import_class(PROP_SETTING.scen)(PROP_SETTING.competition)
### shared components in the workflow # TODO: check if
knowledge_base = (
import_class(PROP_SETTING.knowledge_base)(PROP_SETTING.knowledge_base_path, scen)
if PROP_SETTING.knowledge_base != ""
else None
)
# 1) task generation from scratch
# self.scratch_gen: tuple[HypothesisGen, Hypothesis2Experiment] = DummyHypothesisGen(scen),
# 2) task generation from a complete solution
# self.exp_gen: ExpGen = import_class(PROP_SETTING.exp_gen)(scen)
self.exp_gen = DSExpGen(scen)
self.data_loader_coder = DataLoaderCoSTEER(scen)
self.feature_coder = FeatureCoSTEER(scen)
self.model_coder = ModelCoSTEER(scen)
self.ensemble_coder = EnsembleCoSTEER(scen)
self.workflow_coder = WorkflowCoSTEER(scen)
self.runner = DSRunner(scen)
# self.summarizer: Experiment2Feedback = import_class(PROP_SETTING.summarizer)(scen)
# logger.log_object(self.summarizer, tag="summarizer")
# self.trace = KGTrace(scen=scen, knowledge_base=knowledge_base)
self.trace = DSTrace(scen=scen)
self.summarizer = DSExperiment2Feedback(scen)
super(RDLoop, self).__init__()
def direct_exp_gen(self, prev_out: dict[str, Any]):
exp = self.exp_gen.gen(self.trace)
logger.log_object(exp, tag="direct_exp_gen")
# FIXME: this is for LLM debug webapp, remove this when the debugging is done.
logger.log_object(exp, tag="debug_exp_gen")
return exp
def coding(self, prev_out: dict[str, Any]):
exp = prev_out["direct_exp_gen"]
for tasks in exp.pending_tasks_list:
exp.sub_tasks = tasks
if exp.hypothesis.component == "DataLoadSpec":
exp = self.data_loader_coder.develop(exp)
elif exp.hypothesis.component == "FeatureEng":
exp = self.feature_coder.develop(exp)
elif exp.hypothesis.component == "Model":
exp = self.model_coder.develop(exp)
elif exp.hypothesis.component == "Ensemble":
exp = self.ensemble_coder.develop(exp)
elif exp.hypothesis.component == "Workflow":
exp = self.workflow_coder.develop(exp)
else:
raise NotImplementedError(f"Unsupported component in DataScienceRDLoop: {exp.hypothesis.component}")
exp.sub_tasks = []
logger.log_object(exp, tag="coding")
return exp
def running(self, prev_out: dict[str, Any]):
exp: DSExperiment = prev_out["coding"]
if exp.next_component_required() is None:
new_exp = self.runner.run(exp)
logger.log_object(new_exp, tag="running")
return new_exp
else:
return exp
def feedback(self, prev_out: dict[str, Any]) -> ExperimentFeedback:
exp: DSExperiment = prev_out["running"]
if exp.next_component_required() is None:
feedback = self.summarizer.generate_feedback(exp, self.trace)
else:
feedback = ExperimentFeedback(
reason=f"{exp.hypothesis.component} is completed.",
decision=True,
)
logger.log_object(feedback, tag="feedback")
return feedback
def record(self, prev_out: dict[str, Any]):
e = prev_out.get(self.EXCEPTION_KEY, None)
if e is None:
self.trace.hist.append((prev_out["running"], prev_out["feedback"]))
else:
self.trace.hist.append(
(
prev_out["direct_exp_gen"] if isinstance(e, CoderError) else prev_out["coding"],
ExperimentFeedback.from_exception(e),
)
)
logger.log_object(self.trace, tag="trace")
logger.log_object(self.trace.sota_experiment(), tag="SOTA experiment")
def main(path=None, step_n=None, competition="bms-molecular-translation"):
"""
Parameters
----------
path :
path like `$LOG_PATH/__session__/1/0_propose`. It indicates that we restore the state that after finish the step 0 in loop1
step_n :
How many steps to run; if None, it will run forever until error or KeyboardInterrupt
competition :
Auto R&D Evolving loop for models in a Kaggle scenario.
You can continue running session by
.. code-block:: bash
dotenv run -- python rdagent/app/data_science/loop.py [--competition titanic] $LOG_PATH/__session__/1/0_propose --step_n 1 # `step_n` is a optional parameter
rdagent kaggle --competition playground-series-s4e8 # You are encouraged to use this one.
"""
if competition is not None:
DS_RD_SETTING.competition = competition
if DS_RD_SETTING.competition:
if DS_RD_SETTING.scen.endswith("KaggleScen"):
download_data(competition=DS_RD_SETTING.competition, settings=DS_RD_SETTING)
else:
if not Path(f"{DS_RD_SETTING.local_data_path}/{competition}").exists():
logger.error(f"Please prepare data for competition {competition} first.")
return
else:
logger.error("Please specify competition name.")
if path is None:
kaggle_loop = DataScienceRDLoop(DS_RD_SETTING)
else:
kaggle_loop = DataScienceRDLoop.load(path)
kaggle_loop.run(step_n=step_n)
if __name__ == "__main__":
fire.Fire(main)