Files
NexQuant/rdagent/core/proposal.py
T
you-n-g f78175b37a feat: refactor for general data science (#498)
* refine ds modal for more cases: eval and es

* update model template

* prompts for model and ensemble

* fix a bug

* fix a bug

* init: ds workflow evovingstrategy

* Adding ensemble (#505)

* Initial Draft

* Updating logic for init

* Revising

* Successful Testing

* Updating to use the latest & right class

* bug: bug-fixing for testing

* data science loop changes

* data science loop base

* ds loop feedback

* fix

* remove measure_time because it's duplicated (in LoopBase)

* add the knowledge query for data_loader & feature

* edit ds workflow evaluator

* data_loader bug fix

* stop evolving when all tasks completed

* llm app change

* fix break all complete strategy

* Adding queried knowledge (#508)

Co-authored-by: XianBW <36835909+XianBW@users.noreply.github.com>

* fix loop bug

* ds workflow evaluator; test; refine prompts

* workflow spec

* fix ci

* feature task changes

* ds loop change

* fix a bug in feat

* add query knowledge for model and workflow

* llm_debug info(for show) using pickle instead of json

* remove NextLoopException

* loop change

* coder raise CoderError when all sub_tasks failed

* rename code_dict to file_dict in FBWorkspace

* add CoSTEER unittest

* now show self.version in Task.get_task_information(), simplify CoSTEER sub tasks definition

* remove some properties in ModelTask, add model_type in it.

* fix llm app bug

* llm web app bug fix

* ds loop bug fix

* fix: give component code to feature&ens eval

* loop catch error bug

* rename load_from_raw_data to load_data

* feat: Add debug data creation functionality for data science scenarios

* support local folder (#511)

* support local folder

* remove unnecessary random

* KaggleScen Subclass

* small fix

* use template for style description

* update default scen to kaggle

* update sample data script

* make sure frac < 1

* fix a bug

* feature spec changes

* fix

* changeimport order

* clear unnecessary std outputs

* fix a typo

* create sample folder after unzip kaggle data

* feature/model test script update

* Align the data types across modules.

* fix a bug in model eval

* show line number

* move sample entry point to app

* spec & model prompt changes

* Refine the competition specification to address the data type problem and the coherence issue.

* fix some bugs

* add file filter in FBworkspace.code property

* support non-binary prediction

* avoid too much warnings

* fix a bug in ensemble module

* filtered the knowledge query in all modules

* delete RAG in idea proposal

* refine the code in ensemble

* show exp workspace in llm_st

* exp_gen bug fix

* feedback bug fix

* use `feature` instead of `feat01`

* Trace & method of judging if exp is completed change

* fix a bug in package calling and execute ci

* fix code

* bug fix

* bug fix

* fix a bug

* fix some bugs

* fix a bug

* refactor: Enhance error handling and feedback in data science loop

* support different use_azure on chat and embedding models

* multi-model proposal logic

* fix a small syntax error

* loopBase and some changes

* ensemble scores change

* fbworkspace.code -> .all_codes

* use all model codes in workflow coder

* check scores.csv's keys(model_names)

* model name changes

* add a todo in  ensemble test

* sota_exp changes

* give model info in exp gen

* add runner time limit

* config using debug data or not in evals

* exp to feedback base

* add feature code when writing model task

* small problem

* copying during sampling

* update

* refactor: Simplify code handling and improve workspace management

* model part output fix

* print model's execution time

* bug fix

* ensemble test fix

* ens small change

* ens_test bug fix

* Refine partial expansion logic to display only a few subfolders when their structure is uniform, improving readability in nested directories.

* several update on prompts

* sample subfolders

* Filter the stdout after code execution to remove irrelevant information e.g. progress bars, whitespace characters, excessive line breaks.

* Add some more prompts and comments

* several update on the first init rounds

* model timeout as error

* fix pattern of getting model codes in workspace

* small bux fix on model prompts

* remove get_code_with_key since we have regex pattern

* fix: Correct tqdm progress bar update logic in LoopBase class

* feat: Add diff generation and enhance feedback mechanism in data science loop

* update some fix to model and workflow prompts

* refine the logic of progress bar filter

* add last_successful_exp in exp_gen

* fix a one line bug

* add a hint in prompt

* fix data sample for bms

* fix data sample for bms

* hypothesis small fix

* crawler readme update

* fix component gen

* fix bug

* annotation change

* load description.md if it exists

* refactor: Simplify SOTA description handling in feedback and prompts

* refactor: Use shared templates for feedback and experiment descriptions

* change webapp for model codes changes

* update proposal

* add timeout message for docker run output

* fix

* refine the code in docker time processing

* use .shape instead of len() when do shape eval

* won't change size during iteration

* support bson sample

* sample support jsonl and bson

* add former_code to coder prompts

* a little speed us in debug data creating

* filter progress bar when eval ens and main

* avoid costeer makes no change to former code

* fix several log error

* add timeout judge threshold

* fix some bugs in the evaluation of component output shapes

* File structure for supporting litellm (#517)

Co-authored-by: Young <afe.young@gmail.com>

* ignore submission and show processing

* ignore submission and show processing

* add efficiency notice

* refactor: Enhance error message with detailed feedback summary

* refactor: Simplify component handling in DSExpGen class

* refactor: Update code structure and add docstring for clarity

* reserve one sample to each label in data sampling

* add Evaluation info

* refine costeer code to avoid giving same code twice

* use raw_description as plain text

* add a prompt hint to avoid same dict key

* model task name bug in first model exp gen

* fix a typo

* add some debug info in costeer tests

* task init change

* enhance data sampling

* refine the code in data_loader

* more reasonable loop

* fix a bug in data folder description

* add error msg & traceback to execution feedback

* fix llm error msg detection

* add task information to costeer eval & add cache to docker run(use zipfile to store the whole workspace)

* fix CI first round

* fix CI second round

* use txt to store test script to avoid pytest

* remove zipfile in requirements

* add azure.identity to requirements

* ignore debug web page

* component test changes

* remove redundent task_desc in model coder

* feat: Add APE module and prompts for automated prompt engineering

* fix: Update .gitignore and improve text formatting in eval.py

* refactor: Update print output and improve code comments and imports

* style: Fix string formatting and import order in ape.py and fmt.py

* exclude ape

* add a data folder notice

* reduce unnecessary output to stdout

* refine the code of describe_data_folder

* fix ci

* style: streamlit style update (#522)

* streamlit style update

* fix import

* fix format

* fix llm_st loop progress bar

* debugapp small change

* fix model str

* refine some prompts

* fix model str

* fix CI

* refine the logic associated with the data_folder

* fix ci

* small change

* set filter_progress_bar as default in execute

* model proposal with workflow

* add submission check in workflow eval

* fix bug

* small change

* fix CI

* fix CI

* refactor: Move generate_diff to utils and update DSExpGen logic

* more reasonable prompt describing metric direction

* fix a minor jinja2 bug

* quick fix exp_gen bugs

* fix the following bug

* fix

* fix some bugs

* remove workflow from model

* add pending_tasks_list in data science to enable coding model and workflow

* refine the code for handling JSON-formatted data descriptions

* assert with information

* ensure correct csv file name

* add logging to help record the output

* log competition

* add log tag for debug llm app

* test: Test ds refactor ll (#523)

* fix bugs to former scenario

* fix a bug because coding in rdloop changed

* fix the bug when feedback gets no hypothesis

* fix trace structure

* change all trace hist when merging hypothesis to experiments

* ignore some error in ruff

* fix kaggle scenario bugs

* refine one line

* another bug

* another small bug

* fix ui bugs

* chage kaggle  train.py path

---------

Co-authored-by: Xu Yang <peteryang@vip.qq.com>

* fix CI

* Update rdagent/app/data_science/loop.py

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

* add samplecsv into spec prompts

* fix CI

---------

Co-authored-by: TPLin22 <tplin2@163.com>
Co-authored-by: yuanteli <1957922024@qq.com>
Co-authored-by: Xisen Wang <118058822+xisen-w@users.noreply.github.com>
Co-authored-by: Bowen Xian <xianbowen@outlook.com>
Co-authored-by: Xu Yang <peteryang@vip.qq.com>
Co-authored-by: XianBW <36835909+XianBW@users.noreply.github.com>
Co-authored-by: Tim <illking@foxmail.com>
Co-authored-by: 炼金术师华华 <37462254+YeewahChan@users.noreply.github.com>
Co-authored-by: Linlang <30293408+SunsetWolf@users.noreply.github.com>
Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
2025-01-17 22:53:05 +08:00

204 lines
6.2 KiB
Python

"""
"""
from __future__ import annotations
from abc import ABC, abstractmethod
from typing import TYPE_CHECKING, Generic, TypeVar
from rdagent.core.evaluation import Feedback
from rdagent.core.experiment import ASpecificExp, Experiment
from rdagent.core.knowledge_base import KnowledgeBase
from rdagent.core.scenario import Scenario
if TYPE_CHECKING:
from rdagent.core.prompts import Prompts
# class data_ana: XXX
class Hypothesis:
"""
TODO: We may have better name for it.
Name Candidates:
- Belief
"""
def __init__(
self,
hypothesis: str,
reason: str,
concise_reason: str,
concise_observation: str,
concise_justification: str,
concise_knowledge: str,
) -> None:
self.hypothesis: str = hypothesis
self.reason: str = reason
self.concise_reason: str = concise_reason
self.concise_observation: str = concise_observation
self.concise_justification: str = concise_justification
self.concise_knowledge: str = concise_knowledge
def __str__(self) -> str:
return f"""Hypothesis: {self.hypothesis}
Reason: {self.reason}
Concise Reason & Knowledge: {self.concise_reason}
Concise Observation: {self.concise_observation}
Concise Justification: {self.concise_justification}
Concise Knowledge: {self.concise_knowledge}
"""
# source: data_ana | model_nan = None
# Origin(path of repo/data/feedback) => view/summarization => generated Hypothesis
class ExperimentFeedback(Feedback):
def __init__(
self,
decision: bool,
reason: str,
exception: Exception | None = None,
) -> None:
self.decision = decision
self.reason = reason
self.exception: Exception | None = (
exception # if the experiment raises exception, it will be integrated into part of the feedback.
)
def __bool__(self) -> bool:
return self.decision
def __str__(self) -> str:
return f"Decision: {self.decision}\nReason: {self.reason}"
@classmethod
def from_exception(cls, e: Exception) -> ExperimentFeedback:
"""
A convenient method to create Feedback from an exception.
"""
return cls(decision=False, reason=f"The experiment fails due to {e!s}", exception=e)
class HypothesisFeedback(ExperimentFeedback):
def __init__(
self,
observations: str,
hypothesis_evaluation: str,
new_hypothesis: str,
reason: str,
decision: bool,
) -> None:
super().__init__(decision, reason)
self.observations = observations
self.hypothesis_evaluation = hypothesis_evaluation
self.new_hypothesis = new_hypothesis
def __str__(self) -> str:
return f"""{super().__str__()}
Observations: {self.observations}
Hypothesis Evaluation: {self.hypothesis_evaluation}
New Hypothesis: {self.new_hypothesis}"""
ASpecificScen = TypeVar("ASpecificScen", bound=Scenario)
ASpecificKB = TypeVar("ASpecificKB", bound=KnowledgeBase)
class Trace(Generic[ASpecificScen, ASpecificKB]):
def __init__(self, scen: ASpecificScen, knowledge_base: ASpecificKB | None = None) -> None:
self.scen: ASpecificScen = scen
self.hist: list[tuple[Experiment, ExperimentFeedback]] = []
# TODO: self.hist is 2-tuple now, remove hypothesis from it, change old code for this later.
self.knowledge_base: ASpecificKB | None = knowledge_base
def get_sota_hypothesis_and_experiment(self) -> tuple[Hypothesis | None, Experiment | None]:
"""Access the last experiment result, sub-task, and the corresponding hypothesis."""
# TODO: The return value does not align with the signature.
for experiment, feedback in self.hist[::-1]:
if feedback.decision:
return experiment.hypothesis, experiment
return None, None
class ExpGen(ABC):
def __init__(self, scen: Scenario) -> None:
self.scen = scen
@abstractmethod
def gen(self, trace: Trace) -> Experiment:
"""
Generate the experiment based on the trace.
`ExpGen().gen()` play a role like
.. code-block:: python
# ExpGen().gen() ==
Hypothesis2Experiment().convert(
HypothesisGen().gen(trace)
)
"""
class HypothesisGen(ABC):
# NOTE: the design is a little wierd
# - Sometimes we want accurate access the prompts in a specific level
# - It renders the prompt to a specific abstract level
# - Sometimes we want to access the most recent level prompts
prompts: Prompts # this is a class level prompt.
def __init__(self, scen: Scenario) -> None:
self.scen = scen
@abstractmethod
def gen(self, trace: Trace) -> Hypothesis:
# def gen(self, scenario_desc: str, ) -> Hypothesis:
"""
Motivation of the variable `scenario_desc`:
- Mocking a data-scientist is observing the scenario.
scenario_desc may include:
- data observation:
- Original or derivative
- Task information:
"""
class Hypothesis2Experiment(ABC, Generic[ASpecificExp]):
"""
[Abstract description => concrete description] => Code implementation Card
"""
@abstractmethod
def convert(self, hypothesis: Hypothesis, trace: Trace) -> ASpecificExp:
"""Connect the idea proposal to implementation"""
...
# Boolean, Reason, Confidence, etc.
class Experiment2Feedback(ABC):
""" "Generated feedbacks on the hypothesis from **Executed** Implementations of different tasks
& their comparisons with previous performances"""
def __init__(self, scen: Scenario) -> None:
self.scen = scen
@abstractmethod
def generate_feedback(self, exp: Experiment, trace: Trace) -> ExperimentFeedback:
"""
The `exp` should be executed and the results should be included, as well as the comparison
between previous results (done by LLM).
For example: `mlflow` of Qlib will be included.
"""
error_message = "generate_feedback method is not implemented."
raise NotImplementedError(error_message)