Commit Graph

80 Commits

Author SHA1 Message Date
amstrongzyf c150d33603 fix bug for embedding caused by PR 1188 (#1194) 2025-08-18 20:15:18 +08:00
amstrongzyf 880a6c70c4 fix: enable embedding truncation (#1188)
* fix: enable embedding auto truncation

* move embedding_utils to utils.embedding

* fix bug

* fix(embedding): improve text truncation with retry strategies and binary search optimization

* new way for embedding truncate

* fix ci errors
2025-08-18 17:20:41 +08:00
XianBW c2bde6dcc3 save more time info (#1151) 2025-08-04 17:28:25 +08:00
Xu Yang 305eff1c5e feat: enhance timeout management and knowledge base handling in CoSTEER components (#1130)
* feat: enhance timeout management and knowledge base handling in CoSTEER components

* fix a little bug

* fix small bug

* fix a small bug

* Update rdagent/scenarios/data_science/loop.py

Co-authored-by: you-n-g <you-n-g@users.noreply.github.com>

* add scale check

* fix a small bug

* fix CI

* use dynamic chat_token_limit & remove repeated lines

* fix CI

* remove useless comment

* fix small bug

* update draft appendix

* fix prompt

* add code correctness as top priority

---------

Co-authored-by: you-n-g <you-n-g@users.noreply.github.com>
2025-07-31 13:06:28 +08:00
XianBW 0ccb6e6d56 log time duration when call LLM and show timeout ratio of coding & running in trace UI (#1128) 2025-07-29 17:54:29 +08:00
you-n-g ab97dd8b77 feat: add extra_eval config and import_class for custom evaluators (#1097)
* feat: add extra_eval config and import_class for custom evaluators

* lint

* build: update litellm requirement to >=1.73 for get_valid_models

* refactor: remove *args/**kwargs from _create_embedding_inner_function signature
2025-07-20 16:31:43 +08:00
XianBW 277d12e5bb chore: log LITELLM_SETTINGS when first use (#1074)
* log LITELLM_SETTINGS when first use

* fix ci
2025-07-15 18:41:18 +08:00
XianBW f5615ec383 refactor: move selector codes to an independent folder (#1059)
* refactor: move exp_gen selection files into select directory

* fix selector value in data_science conf

* fix selector template name

* fix CI

---------

Co-authored-by: Young <afe.young@gmail.com>
2025-07-11 17:42:40 +08:00
amstrongzyf e4d4ceafa2 fix: improve the logic of json_schema and refine the reasoning extraction logic for reasoning model (#1044)
* fix: fix a small bug in response_schema

* feat: support response_format parameter in chat completion

* fix: fix between json_mode and response_format

* Update base.py

* Update deprec.py

* add unittest and refine logic

* fix the reasoning extraction logic and refine prompt for deepseek adaptation

* refactor: introduce workflow_check and streamline task parsing

* refine prompt

---------

Co-authored-by: Young <afe.young@gmail.com>
2025-07-11 15:36:03 +08:00
amstrongzyf 53d7c3b6da fix: fix a small bug in response_schema (#1043)
* fix: fix a small bug in response_schema

* black fix
2025-07-09 18:40:48 +08:00
amstrongzyf 09dd0ca3db fix: fix a small bug in json_mode (#1041) 2025-07-09 14:33:24 +08:00
you-n-g a09b09ff8e fix: based on response schema; not function calling (#1038)
* fix: based on response schema; not function calling

* replace all
2025-07-08 21:11:52 +08:00
amstrongzyf f2272f34c1 fix: support experimental support for Deepseek models and update docs about configuration (#1024)
* fix qlib running bug for deepseek and add configuration docs about deepseek
2025-07-07 14:18:56 +08:00
you-n-g e508a71170 chore: document APIBackend parameters and remove sparse dep (#1019) 2025-07-04 20:31:06 +08:00
Xu Yang d0afa599a7 feat: try coder on whole data (#1017)
* commit all code

* fix feedback bug

* add debug mode in ds

* update prompt

* prioritize performance than time lit

* use run instead

* store running time

* move all data running into running phase

* fix a bug

* use sample data as default

---------

Co-authored-by: Xu Yang <xuyang1@microsoft.com>
2025-07-04 14:30:40 +08:00
XianBW ef6b5866c7 feat: show first evo round codes diff (#1009)
* log settings

* add first diff in evolving

* save dict settings

* load settings in data science ui
2025-07-03 19:21:14 +08:00
you-n-g 66e0e8ffd8 feat: add code change summary (#1000)
* feat: add code change summary and dict_get_with_warning util

* feat: support code_change_summary in feedback classes

* lint

* feat: validate response_format using BaseModel and warn unknown formats
2025-06-29 13:40:15 +08:00
Xu Yang 89a39b9396 fix: merge datascience v3 and v2 (#974)
* add coder version

* merge cooder and feedback prompts

* align v2 and v3 proposal prompts

* fix a small bug

* fix a bug

* fix another bug

* support both function calling and json mode in v2 proposal

* fix minor bug

* reformat

* remove proposal v3

* fix a small bug in json mode

* fix CI

* remove tmp file

* remove v3 check

---------

Co-authored-by: Xu Yang <xuyang1@microsoft.com>
2025-06-19 13:25:10 +08:00
Linlang 32a29a7479 fix: main bug (#938)
* feat: parameterize cache paths with USER to avoid conflicts

* guide for missing training_hyperparameters

* guidance for  KeyError: 'concise_reason'

* fixed three bugs in the test

* fix general_model task bug

* fixed some bugs in the med_model scenario

* delete comments

* format with black

* fix mypy error

* fix ruff error

* fix isort error

* sync code

* revert cache_path code

* revert cache_path code

* delete data mining scenario

* fix factor report loop

* fix LiteLLMAPIBackend log_llm_chat_content setting

* refine fin factor report scenario

* remove unused LogColors

* fix UI

* remove medical scenario docs

* change **kaggle** to **data_science**

* remove default dataset_path in create_debug_data

* remove KAGGLE_SETTINGS in kaggle_crawler

* limit litellm versions

* reformat with black

* change README

* fix_data_science_docs

* make hypothesis observations string

* Hiding old versions of kaggle docs

* hidding kaggle agent docs

---------

Co-authored-by: Young <afe.young@gmail.com>
Co-authored-by: Bowen Xian <xianbowen@outlook.com>
Co-authored-by: yuanteli <1957922024@qq.com>
2025-06-18 14:35:45 +08:00
amstrongzyf 9165d64464 docs: update explanation for separate config use in litellm (#958)
* docs: update explanation for separate config use in litellm

* docs: update default backend to `rdagent.oai.backend.LiteLLMAPIBackend`

* docs: update .rst format

* Update installation_and_configuration.rst
2025-06-13 18:32:39 +08:00
you-n-g 09be71d586 feat: parallel loop running based on asyncio (#932)
* refactor: split workflow into pkg, add WorkflowTracker & wait_retry

* feat: add async LoopBase with parallel workers and step semaphores

* fix: replace pickle with dill and run blocking tasks via joblib wrapper

* feat: add log format settings, dynamic parallelism & pickle-based snapshot

* fix: default step semaphore to 1 and avoid subprocess when single worker

* merge bowen's changes

* merge tim's changes

* refactor: extract component task mapping, add conditional logger setup

* lint

* refactor: add type hints and safer remain_time metric logging in workflow

* lint

* fix: allow BadRequestError to be pickled via custom copyreg reducer

* fix: stop loop when LoopTerminationError is raised in LoopBase

* lint

* refactor: make log tag context-local using ContextVar for thread safety

* feat: add subproc_step flag and helper to decide subprocess execution

* fix: use ./cache path and normalize relative volume bind paths

* fix: reset loop_idx to 0 on loop restart/resume to ensure correct flow

* fix: avoid chmod on cache and input dirs in Env timeout wrapper

* fix: skip chmod on 'cache' and 'input' dirs using find -prune

* fix: restrict chmod to immediate mount dirs excluding cache/input

* fix: chmod cache and input dirs alongside their contents after entry run

* fix: guard chmod with directory checks for cache and input

* fix: prefix mount_path in chmod command for cache/input dirs

* fix: drop quotes from find exclude patterns to ensure chmod executes

* fix: skip chmod on cache/input directories to avoid warning spam

* feat: support string volume mappings and poll subprocess stdout/stderr

* support remove symbolic link

* test: use dynamic home path and code volume in LocalEnv local_simple

* fix: skip trace and progress update when loop step is withdrawn

* refactor: add clean_workspace util and non-destructive workspace backup

* fix: preserve symlinks when backing up workspace with copytree

* fix: prevent AttributeError when _pbar not yet initialized in LoopBase

* perf: replace shutil.copytree with rsync for faster workspace backup

* fix: cast log directory Path to str in tar command of data science loop

* fix: use portable 'cp -r -P' instead of rsync for workspace backup

* fix: add retry and logging to workspace backup for robustness

* refactor: extract backup_folder helper and reuse in DataScienceRDLoop

* fix: propagate backup errors & default _pbar getattr to avoid error

* fix the division by zero bug

* refactor: execute RD loops via asyncio.run and add necessary imports

* lint

* lint

* lint

---------

Co-authored-by: Xu <v-xuminrui@microsoft.com>
2025-06-12 11:44:14 +08:00
you-n-g fca945c77f fix: default cost to NaN when calculation fails in LiteLLM backend (#912)
* fix: default cost to NaN when calculation fails in LiteLLM backend

* lint

* lint
2025-05-29 22:58:29 +08:00
Tim a9e223951f chore: withdraw for policy error (#907)
* chore: withdraw for policy error

Co-authored-by: you-n-g <you-n-g@users.noreply.github.com>

* Apply suggestions from code review
2025-05-29 17:23:06 +08:00
Haoran Pan b0e88c7375 feat: enhance compatibility with more LLM models (#905)
* add try-except to avoid retry when using completion_cost

* feat: add JSON prompt injection and think tag removal handling

* refactor: simplify cost handling in LiteLLM backend and clean up style

* docs: clarify purpose of reasoning_think_rm in LLMSettings

* refactor: remove unused *args and redundant cost assignment

---------

Co-authored-by: Young <afe.young@gmail.com>
2025-05-29 15:21:34 +08:00
Tim b59d05b1f7 feat: raise policy violation (#894) 2025-05-22 16:54:34 +08:00
Xu Yang 1fd8abce0f feat: log api status to mlflow (#860)
* log api status to mlflow to frontend tracking

* fix CI

---------

Co-authored-by: Xu Yang <xuyang1@microsoft.com>
2025-05-09 12:20:49 +08:00
Xu Yang 5fecefb802 make timeout fail a hyper parameter (#859)
Co-authored-by: Xu Yang <xuyang1@microsoft.com>
2025-05-08 21:30:44 +08:00
Roland Minrui 24c4eb7225 fix: refine the time/memory constraints prompt in hypothesis proposal (#856)
* refine prompt

* refine the wording

* add ratelimit retry to align with the suggested wait seconds

* add max retry to 0

* don't delete hist

---------

Co-authored-by: Xu <v-xuminrui@microsoft.com>
Co-authored-by: Xu Yang <xuyang1@microsoft.com>
2025-05-08 21:05:07 +08:00
Tim 6be059dd5d chore: log cost object (#829) 2025-04-25 19:26:08 +08:00
Xu Yang 24c4c6755e fix: add time to timer when api timeout bug (#826)
* If not use the session stored timer, need to replace it with the default timer

* when api timeout, add the waiting time to timer
2025-04-25 10:50:27 +08:00
XianBW f8af5c0682 can set reasoning_effor=None in chat_model_map (#823) 2025-04-24 18:47:24 +08:00
XianBW f909b1b6bc feat: using different chat model in different part (#822)
* using model in the chat_model_map in one tag

* add replace timer to DS loop

* fix CI

* fix CI

* add more custom config in chat_model_map

* fix CI

* fix CI

* fix CI

---------

Co-authored-by: Xu Yang <xuyang1@microsoft.com>
2025-04-24 18:22:51 +08:00
Roland Minrui 6fe9be19cd feat: idea pool integrated to exp_gen & add timer to RD-Agent & pause-resume to RD-loops (#795)
* update all code

* update all code

* dump knowledge base

* rename the tag

* add timer to RD-Agent

* fix CI

* fix CI

* use batch embedding

* fix a small bug

* fix prompt bug

* feat: add pause resume to handle K8S cluster pause (#804)

* add resume to cluster running

* fix non-pickle problem

* fix a small bug

* fix a small bug

* avoid shutil move error

* refine the logic

* move knowledge base out of session

* avoid mistake information to pipeline coding

* avoid load and dump in steps

* archive the right folder

* small improvement

* avoid restart when timer is already started

* fix CI

---------

Co-authored-by: Xu Yang <xuyang1@microsoft.com>

---------

Co-authored-by: Xu Yang <peteryang@vip.qq.com>
Co-authored-by: Xu Yang <xuyang1@microsoft.com>
Co-authored-by: Xu <v-xuminrui@microsoft.com>
2025-04-18 14:01:03 +08:00
Xu Yang 829f5534ca feat: raise error when timeout in api call (#793)
* small change to try catch in backend

* fix CI

* add timeout tolerance to 3
2025-04-16 13:50:20 +08:00
you-n-g 121628173f feat: add reasoning_effort parameter to LiteLLMAPIBackend and LLMSett… (#754)
* feat: Add reasoning_effort parameter to LiteLLMAPIBackend and LLMSettings

* style: Use consistent quotation marks for reasoning_effort literals
2025-04-04 19:37:40 +08:00
Roland Minrui 6cc1e5da3c feat: add pipeline coder (#742)
* init commit

* limit problem numbers

* ensemble lower case

* add runtime and spec to coder

* submission check notice

* sub EDA in sample execution

* avoid lightgbm

* add time limit to scenario

* rephrase the submission check

* give positive feedback when facing warning in check

* ENABLE FEEDBACK

* fix feedback bug

---------

Co-authored-by: Xu Yang <peteryang@vip.qq.com>
2025-04-03 13:00:11 +08:00
Roland Minrui 1db6063345 feat: new exp gen v2 implementation (#725)
* first framework commit

* idea proposal v2

Co-authored-by: Roland Minrui <RolandMinrui@users.noreply.github.com>

* fix a small bug in v1

* fix a small bug

* add problem to DShypothesis

* use exp gen as unified interface

* merge yuante's code into pr

* fix a small bug in draft

* update all minrui's code

* small update

* fix small bug & remove useless code

* fix return type

* fix CI

---------

Co-authored-by: Xu Yang <peteryang@vip.qq.com>
Co-authored-by: Roland Minrui <RolandMinrui@users.noreply.github.com>
Co-authored-by: Xu <v-xuminrui@microsoft.com>
Co-authored-by: Xu Yang <xuyang1@microsoft.com>
2025-04-02 13:37:47 +08:00
you-n-g aa8ceed2fa feat: track and log accumulated completion cost in LiteLLMAPIBackend (#727)
* feat: Track and log accumulated completion cost in LiteLLMAPIBackend

* refactor: Use variable for retry count and update import formatting

* lint

* fix: Allow chat_max_tokens to be None in LLMSettings

* feat: Add logging for LiteLLM settings and finish reason in cost calculation
2025-03-28 12:24:19 +08:00
you-n-g 466a851362 fix: default emb model (#702)
* fix: Remove incorrect prefix from default embedding model name

* refactor: Consolidate model settings in LLMSettings class
2025-03-19 12:27:45 +08:00
XianBW e21b334741 feat: out spec change for o1-preview (#666)
* add not_json batcheditout

* ensemble out_spec change

* feature out_spec change

* model out_spec change

* workflow out_spec change

* runner debugger out_spec change

* filter_progress_bar return format fix

* data_loader and spec out_spec change

* show finish_reason in llm log

* json_mode fix

* remove hardcode

* fix CI

* fix grammer

* complete PythonBatchEditOut logic

---------

Co-authored-by: yuanteli <1957922024@qq.com>
2025-03-18 17:43:44 +08:00
Yuante Li edf1bdc997 feat: display LLM prompt (#676)
* log llm prompt

* fix

* fix log llm messages problem

---------

Co-authored-by: Bowen Xian <xianbowen@outlook.com>
2025-03-13 15:57:17 +08:00
Roland Minrui cf86d8feeb fix: return 1D embedding if create_embedding receive a string input (#670)
* return single dimension embedding for string input of create_embedding

* Update base.py

* fix

* fix

* fix

* fix

---------

Co-authored-by: Xu <v-xuminrui@microsoft.com>
2025-03-12 16:10:33 +08:00
you-n-g 44d1ad80c5 fix: target json type & round (#662)
* refactor: Rename direct_exp_gen to json_target_type in DSExpGen class

* fix type

* fix: Adjust loop iterations and update json_target_type for nested dicts
2025-03-05 22:46:43 +08:00
Xu Yang 993ca37125 feat: add type checker to api backend & align litellm and old backend (#647)
* move cache auto continue and retry to all api backend

* add type checker to json mode output

* fix CI

* feat: Add json_mode handling and streaming support in chat completion function

* lint

* fix a bug when returning a dict which value could contain int or bool

* remove litellm

---------

Co-authored-by: Xu Yang <xuyang1@microsoft.com>
Co-authored-by: Young <afe.young@gmail.com>
2025-02-28 15:13:43 +08:00
you-n-g d95fcc0439 feat: Make system prompt role customizable in LLM settings (#632) 2025-02-23 00:52:30 +08:00
you-n-g 5baed909e7 refactor: refactor core framework to better propogate feedbacks (#599)
* refactor: Update type annotations and remove unused class in evolving modules

* refactor: Simplify evolving agent and feedback handling in CoSTEER module

* lint & CI

* mypy

* ruff for core

* mypy

* refactor: remove unnecessary comments and update feedback handling logic

* refactor: Add prev_task_feedback parameter to evolving strategies

* feat: Clear folder before extracting zip file in DockerEnv

* fix: Correct retrieval of last experiment from history
2025-02-16 01:40:44 +08:00
Xu Yang 0a09fd02d3 fix: auto continue small bug (#598) 2025-02-14 17:03:57 +08:00
Xu Yang ed53af4c65 feat: integrate azure deepseek r1 (#591)
* fix several task & integrate deepseek R1

* fix CI

---------

Co-authored-by: Xu Yang <xuyang1@microsoft.com>
2025-02-13 22:20:17 +08:00
炼金术师华华 5090c6153f feat(backend): integrate LiteLLM API Backend (#564)
* File structure for supporting litellm

* more litellm support

* feat: Add CachedAPIBackend class and dynamic API backend retrieval function

* fix: update benchmark folder path and add default values for architecture and hyperparameters

* feat: add LiteLLMAPIBackend and DeprecBackend ; changed structure of the project ; with bus

* fix : deprec_backend

* feat: Add LiteLLMAPIBackend class and related features; update configuration and test cases.

* feat: Enhance LiteLLMAPIBackend with encoder support and dynamic argument handling;Enhance log Colors

* lint

* fix lint...

* fix: Lint

* fix:make auto-lint

* fix:test oai

* fix:redundant _abckend.py

* fix: Optimize LiteLLMAPIBackend on token counting functiona, and clean up unused code;add test on this function

* feat: Add LiteLLMSettings class and update model settings usage

* fix: Update LiteLLMSettings environment variable prefix and model configurations

* fix : gitignore

* test: Consolidate and relocate test files for litellm backend and oai

* fix : lint

* fix: lint

* auto lint

* lint

* LINT

* lint

* chore: remove deprecated backend configuration comments

* refactor: Remove unused functions and imports from deprec.py and llm_utils.py

* refactor: Move md5_hash function from deprec.py to llm_utils.py

* chore: Remove extra newline and add missing import in deprec.py

* lint

* refactor: Move md5_hash function to utils module

* lint

* lint

* lint

---------

Co-authored-by: Young <afe.young@gmail.com>
Co-authored-by: Yihua Chen <v-yihuachen@microsoft.com>
2025-02-13 15:16:18 +08:00
you-n-g 61e9089519 fix: add retry mechanism for GPU device check in DockerEnv (#573)
* fix: add retry mechanism for GPU device check in DockerEnv

* lint

* my py linting

* refactor: Improve type annotations and retry logic in workflow utils

* fix syntax
2025-02-10 08:59:46 +08:00