Commit Graph

132 Commits

Author SHA1 Message Date
Roland Minrui 6f3a44c18a fix: add spec for hyperparameters in task design and coder (#995)
* init commit

* remove the 5-fold spec from prompts

* refine the hyperparameter specification

* do not sample data

* a small spelling issue

* refine prompt to avoid submission cheating

* do not sample data

* simplify code

* refine the coder evaluator prompt

* refine wording

* remove runtime from proposal

* refine wording

* refine prompt

* add gpu info in runtime_info.py

* modify the spec

* add router and add refinement exp gen

* fix prompt bug

* use rule-based logic for router

* complete the prompt

* fix circular import bug

* fix bug

* make refine_decision optional

* update pipeline prompts: (1) add scenary: in an iterative cooding loop and use sample datasets (2)add some generation tops in coding (3)add evaluation guidelines in evaluation (4)polish the json schema and description

* fix a small bug

* fix a small bug

* rdagent/scenarios/data_science/loop.py back to the original version

* refactor: replace _get_exp_gen with default_exp_gen for exp generation

* import

* refactor: make the __init__ back to main

* fix small bugs

* fix bugs for proposal_version

* move refine into runner

* check early stop

* EDA improvement & coder classes number

* fix CI

* slightly refine the prompt

* remove rule_base_eval and remove useless prompt

---------

Co-authored-by: Xu <v-xuminrui@microsoft.com>
Co-authored-by: TPLin22 <tplin2@163.com>
Co-authored-by: amstrongzyf <amstrongzyf@126.com>
Co-authored-by: Xu Yang <peteryang@vip.qq.com>
Co-authored-by: Xu Yang <xuyang1@microsoft.com>
Co-authored-by: Young <afe.young@gmail.com>
2025-07-08 15:22:39 +08:00
you-n-g 856fbde807 refactor: replace run_ret_code with run and adjust helper methods (#1013) 2025-07-03 11:24:05 +08:00
Yuante Li 667af3e1ea feat: added running time statistics for the DS scenario experiment (#1007)
* added running time statistics for the DS scenario experiment

* update execute_ret_code to return running_time

* fix

* fix

* update describe

* add EnvResult

* update corresponding calls

* add RunningInfo class

* fix

* fix

* fix

* fix ci

* rename function name

* fix ci

* fix

* refine running_time logic

* fix ci
2025-07-02 15:11:18 +08:00
Linlang e3278bfe84 fix: fix mount (#1001)
* docs: document extra_volumes dict format in DockerConf

* feat: accept dict values in extra_volumes to specify bind and mode

* fix: skip invalid PDF reports to prevent infinite loop

* from break to raise self.LoopTerminationError

* format with black

---------

Co-authored-by: Young <afe.young@gmail.com>
2025-06-28 20:01:14 +08:00
xuangu-fang a439d9ef2e feat: async mechanism for multi-trace (#981)
* start to work on multi-trace + async

* init ver of async-multi-tarce, to test

* add eng-ver log

* complete version of async+ mul-trace

* debug

* fix bug on         DS_RD_SETTING.get()

* update

* fix bug + simplif the usage of async in multi-trace

* fix mini bug of arg_name

* Move local_selection into class Experiment & clean the code
2025-06-26 15:49:47 +08:00
Xu Yang c5fbff82b7 support tar in dataset & fix a small bug in loop (#986)
Co-authored-by: Xu Yang <xuyang1@microsoft.com>
2025-06-25 15:32:37 +08:00
you-n-g b60f5fc506 fix: refine details (#979)
* feat: add parquet preview and extract common DataFrame preview logic

* refactor: improve error messages, prompts, regex, and session loading

* lint
2025-06-23 10:38:27 +08:00
Copilot f03e6a9812 fix: docker container cleanup to prevent accumulation and system slowdown (#975)
* Initial plan for issue

* Fix Docker container cleanup issue by using try-finally block

Co-authored-by: peteryang1 <25981102+peteryang1@users.noreply.github.com>

* Fix additional Docker container leaks in health_check and GPU test functions

Co-authored-by: peteryang1 <25981102+peteryang1@users.noreply.github.com>

* Remove temporary test files and finalize Docker container cleanup fix

Co-authored-by: peteryang1 <25981102+peteryang1@users.noreply.github.com>

* Refactor container cleanup code to reduce duplication as requested in review feedback

Co-authored-by: peteryang1 <25981102+peteryang1@users.noreply.github.com>

* Refactor container cleanup to use shared function and always stop before remove

Co-authored-by: peteryang1 <25981102+peteryang1@users.noreply.github.com>

* fix CI

* Fix mypy type checking errors for Docker container cleanup

Co-authored-by: peteryang1 <25981102+peteryang1@users.noreply.github.com>

* fix CI

* Remove unnecessary _cleanup_container wrapper method in DockerEnv class

Co-authored-by: peteryang1 <25981102+peteryang1@users.noreply.github.com>

---------

Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com>
Co-authored-by: peteryang1 <25981102+peteryang1@users.noreply.github.com>
Co-authored-by: Xu Yang <xuyang1@microsoft.com>
2025-06-19 18:32:50 +08:00
Linlang 32a29a7479 fix: main bug (#938)
* feat: parameterize cache paths with USER to avoid conflicts

* guide for missing training_hyperparameters

* guidance for  KeyError: 'concise_reason'

* fixed three bugs in the test

* fix general_model task bug

* fixed some bugs in the med_model scenario

* delete comments

* format with black

* fix mypy error

* fix ruff error

* fix isort error

* sync code

* revert cache_path code

* revert cache_path code

* delete data mining scenario

* fix factor report loop

* fix LiteLLMAPIBackend log_llm_chat_content setting

* refine fin factor report scenario

* remove unused LogColors

* fix UI

* remove medical scenario docs

* change **kaggle** to **data_science**

* remove default dataset_path in create_debug_data

* remove KAGGLE_SETTINGS in kaggle_crawler

* limit litellm versions

* reformat with black

* change README

* fix_data_science_docs

* make hypothesis observations string

* Hiding old versions of kaggle docs

* hidding kaggle agent docs

---------

Co-authored-by: Young <afe.young@gmail.com>
Co-authored-by: Bowen Xian <xianbowen@outlook.com>
Co-authored-by: yuanteli <1957922024@qq.com>
2025-06-18 14:35:45 +08:00
Tim 8d1a182292 fix: use simple stdout and stderr (#966)
* use simple stdout and stderr
* add live_output config in LocalConf
2025-06-18 11:54:27 +08:00
Tim b63b79f26f chore: break when loop_n runs out (#964)
* raise loop termination in execute_loop

* add SENTINEL
2025-06-17 15:46:38 +08:00
XianBW 90b0765561 fix: log info (#965)
* fix log caller_info

* make env info beauty
2025-06-16 19:52:44 +08:00
you-n-g 0de9c95c17 fix: add missing semicolon after chmod in env shell command (#955) 2025-06-12 21:02:07 +08:00
you-n-g 6505410268 feat: replace hard-coded cache paths with dynamic cache_path config (#952)
* feat: replace hard-coded cache paths with dynamic cache_path config

* style: reorder wait_retry import and format chmod list

* refactor: pass workspace_path to chmod command and use DockerConf check
2025-06-12 17:44:31 +08:00
you-n-g 09be71d586 feat: parallel loop running based on asyncio (#932)
* refactor: split workflow into pkg, add WorkflowTracker & wait_retry

* feat: add async LoopBase with parallel workers and step semaphores

* fix: replace pickle with dill and run blocking tasks via joblib wrapper

* feat: add log format settings, dynamic parallelism & pickle-based snapshot

* fix: default step semaphore to 1 and avoid subprocess when single worker

* merge bowen's changes

* merge tim's changes

* refactor: extract component task mapping, add conditional logger setup

* lint

* refactor: add type hints and safer remain_time metric logging in workflow

* lint

* fix: allow BadRequestError to be pickled via custom copyreg reducer

* fix: stop loop when LoopTerminationError is raised in LoopBase

* lint

* refactor: make log tag context-local using ContextVar for thread safety

* feat: add subproc_step flag and helper to decide subprocess execution

* fix: use ./cache path and normalize relative volume bind paths

* fix: reset loop_idx to 0 on loop restart/resume to ensure correct flow

* fix: avoid chmod on cache and input dirs in Env timeout wrapper

* fix: skip chmod on 'cache' and 'input' dirs using find -prune

* fix: restrict chmod to immediate mount dirs excluding cache/input

* fix: chmod cache and input dirs alongside their contents after entry run

* fix: guard chmod with directory checks for cache and input

* fix: prefix mount_path in chmod command for cache/input dirs

* fix: drop quotes from find exclude patterns to ensure chmod executes

* fix: skip chmod on cache/input directories to avoid warning spam

* feat: support string volume mappings and poll subprocess stdout/stderr

* support remove symbolic link

* test: use dynamic home path and code volume in LocalEnv local_simple

* fix: skip trace and progress update when loop step is withdrawn

* refactor: add clean_workspace util and non-destructive workspace backup

* fix: preserve symlinks when backing up workspace with copytree

* fix: prevent AttributeError when _pbar not yet initialized in LoopBase

* perf: replace shutil.copytree with rsync for faster workspace backup

* fix: cast log directory Path to str in tar command of data science loop

* fix: use portable 'cp -r -P' instead of rsync for workspace backup

* fix: add retry and logging to workspace backup for robustness

* refactor: extract backup_folder helper and reuse in DataScienceRDLoop

* fix: propagate backup errors & default _pbar getattr to avoid error

* fix the division by zero bug

* refactor: execute RD loops via asyncio.run and add necessary imports

* lint

* lint

* lint

---------

Co-authored-by: Xu <v-xuminrui@microsoft.com>
2025-06-12 11:44:14 +08:00
Tim 60f3c99556 chore: continue to read output (#945) 2025-06-07 13:22:56 +08:00
Linlang c8f1c5364a chore: add a rdagent server with UI & logger storage refinement(#553)
* change_log_object

* lint code

* delete comments

* change_log_object

* change_log_object

* fix import test error

* update code

* update code

* fix bugs

* skip mypy error

* skip mypy error

* skip mypy error

* Start the flask server before running the demo.

* achieve front and back interaction

* fix github-advanced-security comments

* fix github-advanced-security comments

* tmp ignore

* fix CI

* move some logic

* change format

* adjust logic

* log2json changes

* tmp

* fix

* fix bug

* refine log2json between 5 scenarios

* fix

* refine codes

* fix logic

* use localhost

* add loop & all_duration param for old scenario startup

* merge control logic

* add README for server ui api

* update README

* reuse code in logger

* add loop_n and all_duration param

* fix upload

* ui server now use port in setting

* fix port setting

* fix port setting

* fix mypy check

* refine logger and log storage

* fix ruff error

* fix CI

* refine logger, loop, storage

* bind one FileStorage with one logger

* not truncate log storage

* refine LoopBase.load(), use `checkout` instead of `output_path` and `do_truncate`

* clear session folder when loading loop to run

* move component info init step to ExpGen Class

* Update rdagent/utils/workflow.py

* move truncate_session function to LoopBase class

* add checkout param for other scenarios

* fix bug

* move WebStorage to UI

* change web_storage name

* add randomname to requirements

* add typer

* fix requirements

---------

Co-authored-by: WinstonLiyte <1957922024@qq.com>
Co-authored-by: Bowen Xian <xianbowen@outlook.com>
Co-authored-by: you-n-g <you-n-g@users.noreply.github.com>
2025-06-06 18:52:19 +08:00
Tim 6ce765f05d fix: conda error information (#941)
* test with conda error

* reformat
2025-06-06 11:45:48 +08:00
XianBW 83dd0de98a change qlib install method (#937) 2025-06-05 11:40:46 +08:00
Tim 7518ab66fa fix: ds trace (#929)
* fix: remove_ansi_codes
* chore: rename function
2025-06-04 18:30:29 +08:00
Tim bb71c18080 feat: merge selectively (#888)
* chore: avoid incorporate changes
best as sota
merge hypothesis
fix: max_retrieve_num after decision
chore: select last experiments and feedbacks
* add the set_current_selection before the exp_gen when merging
add trace.NEW_ROOT
fix: no scen_prob_multiplier
fix: use regex with timeout
chore: hypothesis_rank with selected_idx
chore: define is_parent in proposal
chore: rename collect_all_ancestors to get_parent_exps
---------

Co-authored-by: you-n-g <you-n-g@users.noreply.github.com>
Co-authored-by: Young <afe.young@gmail.com>
Co-authored-by: Xu <v-xuminrui@microsoft.com>
Co-authored-by: Xu Yang <xuyang1@microsoft.com>
2025-06-04 14:46:47 +08:00
you-n-g fca945c77f fix: default cost to NaN when calculation fails in LiteLLM backend (#912)
* fix: default cost to NaN when calculation fails in LiteLLM backend

* lint

* lint
2025-05-29 22:58:29 +08:00
Tim a9e223951f chore: withdraw for policy error (#907)
* chore: withdraw for policy error

Co-authored-by: you-n-g <you-n-g@users.noreply.github.com>

* Apply suggestions from code review
2025-05-29 17:23:06 +08:00
Yuante Li d1019cb568 feat: add RD-Agent-Quant scenario (#838)
* fix model input shape bug and costeer_model bug

* fix a bug

* fix a bug in docker result extraction

* a system-level optimization

* add a filter of stdout

* update

* add stdout to model

* model training_hyperparameters update

* quant scenario

* update some quant settings

* llm choose action

* Thompson Sampling Bandit for action choosing

* refine both scens

* add trace messages for quant scen

* fix some bugs

* fix some bugs

* update

* update

* update

* fix

* fix

* fix

* update for merge

* fix ci

* fix some bugs

* fix ci

* fix ci

* fix ci

* fix ci

* refactor

* default qlib4rdagent local env downloading

* fix ci

* fix ci

* fix a bug

* fix ci

* fix: align all prompts on template (#908)

* use template to render all prompts

* fix CI

---------

Co-authored-by: Xu Yang <xuyang1@microsoft.com>

* add fin_quant in cli

* fix a bug

* fix ci

* fix some bugs

* refactor

* remove the columns in hypothesis if no value generated in this column

* fix a bug

* fix ci

* fix conda env

* add qlib gitignore

* remove existed qlib folder & install torch in qlib conda

* fix workspace ui in feedback

* align model config in coder and runner in docker or conda

* fix CI

* fix CI

---------

Co-authored-by: Xu Yang <peteryang@vip.qq.com>
Co-authored-by: Xu Yang <xuyang1@microsoft.com>
2025-05-29 16:16:51 +08:00
Tim 903403a90c chore: add kill after for timeout (#899) 2025-05-27 12:02:22 +08:00
Yuante Li fdbffae4d7 fix: fix the bug in the regular expression matching for stdout (#890) 2025-05-23 14:13:31 +08:00
Xu Yang fa53473b6c fix: typo in workflow (#861) 2025-05-09 13:29:36 +08:00
Xu Yang 1fd8abce0f feat: log api status to mlflow (#860)
* log api status to mlflow to frontend tracking

* fix CI

---------

Co-authored-by: Xu Yang <xuyang1@microsoft.com>
2025-05-09 12:20:49 +08:00
Tim 46dec7b624 feat: custom data (#810)
* custom data

* fix: simplify competition check and log local description file

* no sample data

* feat: add test evaluation module with error handling support

* fix: update eval path to use eval_sub_dir and add valid_check TODO

* refactor: add MLETestEval check to conditionally run grading steps

* avoid blank stdout

* valid in testeval

* rename test.csv to avoid conflict

* Support Disabling sample submission

* refactoring

* fix: remove DS_KAGGLE_DATA and update prompt instructions

* add try for grade

* ignore submission

* fix: remove tee from eval command and warn about pipeline exit code detection

* optional to use raw description

* support old data

* add execution result to stdout

* add metric to raw description

* custom data explain

* add debug_path

* rst update

---------

Co-authored-by: Young <afe.young@gmail.com>
2025-05-06 16:00:13 +08:00
you-n-g ec51bb94b6 feat: trace merging (#836)
* feat: runnalbe -- add exp_gen_cls param, get_leaves and merge exp gen functionalities

* fix: remove unused scenario_desc and update YAML task labels

* feat: override selection and update merge task description

* lint

* lint

* lint

* lint

* lint

* fix: log competition setting to enable mle_summary

* fix name error
2025-04-29 09:30:45 +08:00
Xu Yang 2b821884e7 If not use the session stored timer, need to replace it with the default timer (#825) 2025-04-25 00:39:31 +08:00
XianBW f909b1b6bc feat: using different chat model in different part (#822)
* using model in the chat_model_map in one tag

* add replace timer to DS loop

* fix CI

* fix CI

* add more custom config in chat_model_map

* fix CI

* fix CI

* fix CI

---------

Co-authored-by: Xu Yang <xuyang1@microsoft.com>
2025-04-24 18:22:51 +08:00
Yuante Li 18a115b4e0 fix: fix some minor bugs in qlib scenario (#817)
* fix some bugs

* fix a bug

* fix a bug in qlib frontend

* fix ci

* fic ci

* fix qlib Dockerfile
2025-04-23 18:48:02 +08:00
Xu Yang 0f2399667b feat: add mlflow logger in RD loop to log (#815)
* add mlflow logger in DS loop

* fix CI

* fix CI

---------

Co-authored-by: Xu Yang <xuyang1@microsoft.com>
2025-04-22 01:23:40 +08:00
Xu Yang 2b7122f41f fix: bug fix in timer start (#807) 2025-04-18 16:16:28 +08:00
Roland Minrui 6fe9be19cd feat: idea pool integrated to exp_gen & add timer to RD-Agent & pause-resume to RD-loops (#795)
* update all code

* update all code

* dump knowledge base

* rename the tag

* add timer to RD-Agent

* fix CI

* fix CI

* use batch embedding

* fix a small bug

* fix prompt bug

* feat: add pause resume to handle K8S cluster pause (#804)

* add resume to cluster running

* fix non-pickle problem

* fix a small bug

* fix a small bug

* avoid shutil move error

* refine the logic

* move knowledge base out of session

* avoid mistake information to pipeline coding

* avoid load and dump in steps

* archive the right folder

* small improvement

* avoid restart when timer is already started

* fix CI

---------

Co-authored-by: Xu Yang <xuyang1@microsoft.com>

---------

Co-authored-by: Xu Yang <peteryang@vip.qq.com>
Co-authored-by: Xu Yang <xuyang1@microsoft.com>
Co-authored-by: Xu <v-xuminrui@microsoft.com>
2025-04-18 14:01:03 +08:00
you-n-g a974dd9ba3 refactor: use dynamic input path and update template loader (#792)
* refactor: use dynamic input path and update template loader

* fix: update include syntax for data source in prompts.yaml

* add customization path

* docs: update prompts for ensemble scoring and metric direction

* chore: remove obsolete data_science/share.yaml file
2025-04-16 18:11:46 +08:00
you-n-g 453265705e feat: add DocDev for auto-generating workspace documentation (#781)
* feat: add DocDev for auto-generating workspace documentation

* fix: update markdown instructions in tpl.yaml

* feat: add enable_doc_dev flag and conditionally call DocDev
2025-04-10 20:12:21 +08:00
Tim a6ae88fb42 chore: fit more competition (#723)
1. Remove potential <code> tags from the generated code.
2. Use return codes in data_loader, feature, and model.
3. Configure the debug timeout.
2025-04-10 17:56:57 +08:00
Tim 612621f393 feat: pull image with progress (#777)
pull image with progress
2025-04-10 12:00:27 +08:00
you-n-g bbc591b401 feat: dump model (#776)
* feat: add model dump flag and multi-evaluator support

* tmp code

* refactor: update evaluator feedback and FBWorkspace types

* feat: add get_clear_ws_cmd and CPU count in Docker environment

* feat: Add model dump check level and enhance evaluator functionality

fix data type bug

* fix: Ensure required files exist before model dump evaluation

* refactor: streamline prompt and file checks in model dump evaluation

* fix: add assertions and reorder file reads in model dump evaluator

* feat: remove EDA part from evaluation output

* docs: update dump_model guidelines and eval prompt to include template

* style: reformat multiline dicts and lists in conf and eval files

* fix: add DOTALL flag to EDA removal regex
2025-04-09 23:24:12 +08:00
XianBW f0d919f04c chore: data science scenario UI updates (#757)
* ui changes

* add ours vs medal threshold

* add success loop statistic of components

* show times info

* UI updates

* summary selected

* change colors

* fix CI

* add stat hours param for `mle_summary.py --summary` command

* add 24h summary button

* fix CI

* add logger info for dockerEnv/condaEnv running time
2025-04-07 16:24:27 +08:00
Tim 43c8ed2aaf feat: joblib cache (#749)
* cache function

* fix test

* bin cache

* fix test

* fix test

* fix test

* cache for different source

* cache for localenv

* remove unnecessary log

* reformat

* remove unrelated modify
2025-04-04 12:08:18 +08:00
you-n-g 3d6ae62ad5 feat: loader prompt & simplify YAML loading and update data loader specifications (#736)
* refactor: Simplify YAML loading and update data loader specifications

* docs: Add comment explaining FunctionLoader usage in tpl.py

* lint

* lint
2025-04-01 22:36:25 +08:00
Yuante Li c5dcd3b704 fix: fix a bug in regular expression exception processing (#734)
* fix a bug in regular expression exception precessing

* fix ci

* fix
2025-04-01 16:54:05 +08:00
you-n-g 2574b0114f feat: Add line length limit to shrink_text function and settings (#715) 2025-03-21 00:41:52 +08:00
Yuante Li 613121ca45 fix: fix a bug in progress_bar filter (#712)
* fix a bug in progress_bar filter

* fix
2025-03-20 16:02:09 +08:00
Yuante Li 5a73901d2d fix: clarify an ambiguous explanation (#705) 2025-03-19 17:57:04 +08:00
XianBW e21b334741 feat: out spec change for o1-preview (#666)
* add not_json batcheditout

* ensemble out_spec change

* feature out_spec change

* model out_spec change

* workflow out_spec change

* runner debugger out_spec change

* filter_progress_bar return format fix

* data_loader and spec out_spec change

* show finish_reason in llm log

* json_mode fix

* remove hardcode

* fix CI

* fix grammer

* complete PythonBatchEditOut logic

---------

Co-authored-by: yuanteli <1957922024@qq.com>
2025-03-18 17:43:44 +08:00
Yuante Li 3e9ba73c2f feat: add model removal and adjust some framework logic (#681)
* prune model task

* add component_description

* add model removal logic to component, hypo, and task gen

* fix ci

* adjust coder to meet the requirement of model removal

* fix and refine the logic of model removal

* add model removal logic in model_eval

* fix ci

* fix ci

* prune some unnecessary codes
2025-03-18 14:42:53 +08:00