Commit Graph

52 Commits

Author SHA1 Message Date
Xu Yang e0519b56ae feat: add coder check and give more time (#1127)
* feat: introduce max_seconds_multiplier for timeout management across components

* avoid using assert in test

* hot fix a very small bug

* runner multiply twice

* revert feedback change

* add a switch to longer timeout
2025-07-29 14:59:38 +08:00
Xu Yang 51921c2344 fix: minor fix to runtime_environment (#1089)
* minor fix to funtime_environment

* add python runtime info header
2025-07-17 19:58:06 +08:00
Yuante Li fb8f2b561e fix: fix a minor bug in DS eval (#1012) 2025-07-02 23:31:29 +08:00
Yuante Li 667af3e1ea feat: added running time statistics for the DS scenario experiment (#1007)
* added running time statistics for the DS scenario experiment

* update execute_ret_code to return running_time

* fix

* fix

* update describe

* add EnvResult

* update corresponding calls

* add RunningInfo class

* fix

* fix

* fix

* fix ci

* rename function name

* fix ci

* fix

* refine running_time logic

* fix ci
2025-07-02 15:11:18 +08:00
you-n-g cd237292ea feat: add hide_base_name option and update data folder prompts (#1004)
* feat: add hide_base_name option and update data folder prompts

* rename folder
2025-06-29 21:22:16 +08:00
you-n-g 6505410268 feat: replace hard-coded cache paths with dynamic cache_path config (#952)
* feat: replace hard-coded cache paths with dynamic cache_path config

* style: reorder wait_retry import and format chmod list

* refactor: pass workspace_path to chmod command and use DockerConf check
2025-06-12 17:44:31 +08:00
you-n-g 09be71d586 feat: parallel loop running based on asyncio (#932)
* refactor: split workflow into pkg, add WorkflowTracker & wait_retry

* feat: add async LoopBase with parallel workers and step semaphores

* fix: replace pickle with dill and run blocking tasks via joblib wrapper

* feat: add log format settings, dynamic parallelism & pickle-based snapshot

* fix: default step semaphore to 1 and avoid subprocess when single worker

* merge bowen's changes

* merge tim's changes

* refactor: extract component task mapping, add conditional logger setup

* lint

* refactor: add type hints and safer remain_time metric logging in workflow

* lint

* fix: allow BadRequestError to be pickled via custom copyreg reducer

* fix: stop loop when LoopTerminationError is raised in LoopBase

* lint

* refactor: make log tag context-local using ContextVar for thread safety

* feat: add subproc_step flag and helper to decide subprocess execution

* fix: use ./cache path and normalize relative volume bind paths

* fix: reset loop_idx to 0 on loop restart/resume to ensure correct flow

* fix: avoid chmod on cache and input dirs in Env timeout wrapper

* fix: skip chmod on 'cache' and 'input' dirs using find -prune

* fix: restrict chmod to immediate mount dirs excluding cache/input

* fix: chmod cache and input dirs alongside their contents after entry run

* fix: guard chmod with directory checks for cache and input

* fix: prefix mount_path in chmod command for cache/input dirs

* fix: drop quotes from find exclude patterns to ensure chmod executes

* fix: skip chmod on cache/input directories to avoid warning spam

* feat: support string volume mappings and poll subprocess stdout/stderr

* support remove symbolic link

* test: use dynamic home path and code volume in LocalEnv local_simple

* fix: skip trace and progress update when loop step is withdrawn

* refactor: add clean_workspace util and non-destructive workspace backup

* fix: preserve symlinks when backing up workspace with copytree

* fix: prevent AttributeError when _pbar not yet initialized in LoopBase

* perf: replace shutil.copytree with rsync for faster workspace backup

* fix: cast log directory Path to str in tar command of data science loop

* fix: use portable 'cp -r -P' instead of rsync for workspace backup

* fix: add retry and logging to workspace backup for robustness

* refactor: extract backup_folder helper and reuse in DataScienceRDLoop

* fix: propagate backup errors & default _pbar getattr to avoid error

* fix the division by zero bug

* refactor: execute RD loops via asyncio.run and add necessary imports

* lint

* lint

* lint

---------

Co-authored-by: Xu <v-xuminrui@microsoft.com>
2025-06-12 11:44:14 +08:00
Tim 46dec7b624 feat: custom data (#810)
* custom data

* fix: simplify competition check and log local description file

* no sample data

* feat: add test evaluation module with error handling support

* fix: update eval path to use eval_sub_dir and add valid_check TODO

* refactor: add MLETestEval check to conditionally run grading steps

* avoid blank stdout

* valid in testeval

* rename test.csv to avoid conflict

* Support Disabling sample submission

* refactoring

* fix: remove DS_KAGGLE_DATA and update prompt instructions

* add try for grade

* ignore submission

* fix: remove tee from eval command and warn about pipeline exit code detection

* optional to use raw description

* support old data

* add execution result to stdout

* add metric to raw description

* custom data explain

* add debug_path

* rst update

---------

Co-authored-by: Young <afe.young@gmail.com>
2025-05-06 16:00:13 +08:00
you-n-g d46d27375d refactor: use remove_eda_part for EDA cleanup, fix diff eval (#800) 2025-04-17 16:19:26 +08:00
you-n-g a974dd9ba3 refactor: use dynamic input path and update template loader (#792)
* refactor: use dynamic input path and update template loader

* fix: update include syntax for data source in prompts.yaml

* add customization path

* docs: update prompts for ensemble scoring and metric direction

* chore: remove obsolete data_science/share.yaml file
2025-04-16 18:11:46 +08:00
you-n-g e05a645ad4 feat: refine prompt (#760)
* style: Simplify language and improve clarity in prompts and share.yaml

* style: Update prompt wording for clarity in raw_data_loader

* style: Simplify conditional logic in task_gen system prompt

* refactor: Update prompts and proposal for component output format handling

* fix: Correct grammar and add clarification in prompts.yaml

* feat: Include coding guidelines in data science component prompts

* lint
2025-04-16 09:35:30 +08:00
Tim a6ae88fb42 chore: fit more competition (#723)
1. Remove potential <code> tags from the generated code.
2. Use return codes in data_loader, feature, and model.
3. Configure the debug timeout.
2025-04-10 17:56:57 +08:00
xuangu-fang fd155d1fa8 feat: checkpoint selection (#744)
* rebase selection code

* bug-free run: checkpoint selection and dynamic EDA loading

* add prototypes of various selectors, to imp. and test later

* fix EDA write bug

* move selector to from proposal.py tp seletc.py

* auto lint

* fix line-too-long typos

* aligh the design of "selection", rm extra instance check

* make auto-lint

* add non-trival selector: SOTAjump
2025-04-09 09:42:30 +08:00
Tim 43c8ed2aaf feat: joblib cache (#749)
* cache function

* fix test

* bin cache

* fix test

* fix test

* fix test

* cache for different source

* cache for localenv

* remove unnecessary log

* reformat

* remove unrelated modify
2025-04-04 12:08:18 +08:00
you-n-g d82442f2ed refactor: Improve data handling and representation in eval tests and prompts (#740) 2025-04-03 13:53:25 +08:00
Xu Yang f18c1828c8 costeer max loop as hyperp & skip workflow in eval (#737) 2025-04-02 14:18:42 +08:00
you-n-g 3d6ae62ad5 feat: loader prompt & simplify YAML loading and update data loader specifications (#736)
* refactor: Simplify YAML loading and update data loader specifications

* docs: Add comment explaining FunctionLoader usage in tpl.py

* lint

* lint
2025-04-01 22:36:25 +08:00
you-n-g cc063dd646 feat: update prompts and descriptions for data science components (#731)
* docs: Update prompts and descriptions for data science components

* chore: Remove outdated comments from conf.py

* feat: Add metric_name attribute to DataScienceScen class

* style: Update description in prompts.yaml and reorder metric_name init

* docs: Update prompts.yaml with feature engineering guidelines
2025-04-01 20:54:42 +08:00
XianBW 7733841f1c feat: make spec optional (#719)
* feat: Add spec_enabled configuration for data science settings

* make spec alternative

* change spec logic in exp_gen

* remove some general texts

* align

---------

Co-authored-by: Young <afe.young@gmail.com>
Co-authored-by: yuanteli <1957922024@qq.com>
2025-03-27 17:17:41 +08:00
Yuante Li 8133e4dcde feat: add cross validation to workflow (#700) 2025-03-19 17:56:42 +08:00
XianBW e21b334741 feat: out spec change for o1-preview (#666)
* add not_json batcheditout

* ensemble out_spec change

* feature out_spec change

* model out_spec change

* workflow out_spec change

* runner debugger out_spec change

* filter_progress_bar return format fix

* data_loader and spec out_spec change

* show finish_reason in llm log

* json_mode fix

* remove hardcode

* fix CI

* fix grammer

* complete PythonBatchEditOut logic

---------

Co-authored-by: yuanteli <1957922024@qq.com>
2025-03-18 17:43:44 +08:00
XianBW 229866123b fix preds_dict's keys (#695) 2025-03-17 23:33:17 +08:00
Yuante Li 6a6c9832f4 fix: fix a minor bug (#694) 2025-03-17 21:43:26 +08:00
Yuante Li 119d69185a fix: fix a bug related to model_name in ensemble (#692)
* fix a bug related to model_name in ensemble

* refine
2025-03-17 21:23:57 +08:00
XianBW 699984fe1e validate and update 'final_decision' before init CosTeerFeedback (#691) 2025-03-17 19:53:09 +08:00
you-n-g 20778a9b87 feat: condaenv & full docker env (#668)
* use conda to run kaggle and mlebench code

* refactor: Simplify environment configuration and execution logic

* add setting to use local env in ds

* refine dockerfile

* fix: Move MLEBDockerEnv initialization inside conditionals &  fix condaenv

* refactor: reformat code for better readability and consistency

* feat: add conda env to all envs.

* fix: fix bugs when run loop

* refactor: Simplify DockerEnv configuration in mle_summary.py

* fix image bug

* style: reformat code for better readability and consistency

* change commit

* feat: Add entrypoint script for sing_docker scenario in rdagent

* refactor: add Any type hints and comments for clarity in env.py

* feat: Create log directory if it doesn't exist in entrypoint script

* feat: Add debug mode and list root directory in entrypoint script

* fix: Remove specific branch checkout in Dockerfile for RD-Agent

* fix: Add competition argument to loop.py script execution

* fix: Correct directory navigation and dependency installation in entrypoint.sh

* fix: Correct user ownership assignment in entrypoint script

* refactor: Comment out redundant log copying to RD_OUTPUT_DIR

* fix: Unset LOG_TRACE_PATH to prevent log contamination in entrypoint.sh

---------

Co-authored-by: Xu Yang <peteryang@vip.qq.com>
2025-03-12 11:36:28 +08:00
Haoran Pan 8ee918a0f3 feat: variable printing tool of data_science coder testing (#658)
* update debug_info printing

* refine infomation printing

* update ensemble evaluator prompt

* substitute repr with reprlib.repr

* strip comments
2025-03-05 13:08:30 +08:00
Xu Yang 993ca37125 feat: add type checker to api backend & align litellm and old backend (#647)
* move cache auto continue and retry to all api backend

* add type checker to json mode output

* fix CI

* feat: Add json_mode handling and streaming support in chat completion function

* lint

* fix a bug when returning a dict which value could contain int or bool

* remove litellm

---------

Co-authored-by: Xu Yang <xuyang1@microsoft.com>
Co-authored-by: Young <afe.young@gmail.com>
2025-02-28 15:13:43 +08:00
Xu Yang 2bceddf8a3 feat: add eda to data science scenario (#639)
* add eda to data science scenario

* fix CI
2025-02-26 22:35:44 +08:00
Xu Yang 3392a518fb feat: add max time config to costeer in data science (#645)
* add max time config to costeer

* fix a small bug

---------

Co-authored-by: Xu Yang <xuyang1@microsoft.com>
2025-02-26 18:36:51 +08:00
Yuante Li 21dfcdabf8 fix: clarify cross_validation (#644) 2025-02-26 17:52:30 +08:00
XianBW 75bdce3631 change ensemble metric prompt's code tips (#640) 2025-02-26 11:40:25 +08:00
XianBW 6db80918fc fix: avoid try-except in ensemble eval prompts (#637)
* avoid try-except in prompts

* remove try-except limit from coder prompt

* add no try-except criteria in ensemble eval
2025-02-25 23:06:41 +08:00
XianBW 374dbdb553 fix: add ensemble test, change to "use cross-validation if possible" in workflow spec (#634)
* change to "use cross-validation if possible" in workflow spec

* Limit the evaluation indicator to only one

* add metric tips

* string change
2025-02-24 20:28:32 +08:00
Yuante Li 538df31efe fix: fix a bug in cross validation (#618)
* fix a bug in cross_validation

* fix cross-validation prompt position

* fix

* fix

* append all error messages and full traceback details in execution

---------

Co-authored-by: Bowen Xian <xianbowen@outlook.com>
2025-02-20 16:18:40 +08:00
Xu Yang 15584bad43 fix restart bug (#609) 2025-02-18 15:39:34 +08:00
Yuante Li f322766a00 fix: fix some minor bugs and add AutoML & cross-validation (#604)
* fix some complex sentences

* add AutoML in model and cross-validation in workflow
2025-02-17 19:14:50 +08:00
you-n-g 5baed909e7 refactor: refactor core framework to better propogate feedbacks (#599)
* refactor: Update type annotations and remove unused class in evolving modules

* refactor: Simplify evolving agent and feedback handling in CoSTEER module

* lint & CI

* mypy

* ruff for core

* mypy

* refactor: remove unnecessary comments and update feedback handling logic

* refactor: Add prev_task_feedback parameter to evolving strategies

* feat: Clear folder before extracting zip file in DockerEnv

* fix: Correct retrieval of last experiment from history
2025-02-16 01:40:44 +08:00
Yuante Li 3c2f799618 fix: fix some bugs in the ensemble component (#595)
* allow the LLM in the ensemble to focus on the significance of metrics

* fix a bug in feedback

* prun spec

* fix a bug in ensemble

* delete unnecessary prompts

* fix the logic in spec

* generalize dataset split
2025-02-14 15:32:40 +08:00
Xu Yang ed53af4c65 feat: integrate azure deepseek r1 (#591)
* fix several task & integrate deepseek R1

* fix CI

---------

Co-authored-by: Xu Yang <xuyang1@microsoft.com>
2025-02-13 22:20:17 +08:00
XianBW 3d8ec4e272 fix: coder prompt & model test text (#583)
* test text fix

* Require LLM to use print() instead of logging
2025-02-11 21:12:25 +08:00
Xu Yang 203967ae9a add feedback to workspace and ds runner base on costeer 2025-02-11 20:50:19 +08:00
Yuante Li e2b7c9dc78 fix: fix the errors in the coder and evaluator of the five components (#576)
* refine the prompt in feat coder

* refine data loader prompt in coder & eval

* fix

* fix

* refine model prompt in coder & eval

* refine ensemble prompt in coder & eval

* refine workflow prompt in coder & eval

* fix
2025-02-10 20:20:30 +08:00
Yuante Li 63d7388612 add the none check for data loader & feature output (#577) 2025-02-10 20:18:01 +08:00
you-n-g cade50de89 fix: handle division by zero in percentage calculations (#550)
* fix: Handle division by zero in percentage calculations

* lint
2025-02-05 10:21:53 +08:00
you-n-g 8bc381855e fix: replace API call with build_cls_from_json_with_retry function (#548)
* refactor: Replace API call with build_cls_from_json_with_retry function

* fix lint error

* fix lint errors

* lint

* trigger
2025-01-27 20:19:11 +08:00
Tim 654eabc13a chore: rename ens_and_decision (#541)
* rename ens_and_decision

* clarify workflow prompt

* rename
2025-01-24 17:24:31 +08:00
Xu Yang 3717cd3bcd fix inject code bug and improve dataloader spec code (#532) 2025-01-23 13:24:44 +08:00
Xu Yang e3205fd064 update all (#530) 2025-01-22 22:22:48 +08:00
Tim bdfdc1689f chore: add runtime info (#526)
* add runtime info

* Update rdagent/scenarios/data_science/scen/__init__.py

Co-authored-by: you-n-g <you-n-g@users.noreply.github.com>

* reformatted by black

---------

Co-authored-by: you-n-g <you-n-g@users.noreply.github.com>
2025-01-21 16:15:45 +08:00