Commit Graph

49 Commits

Author SHA1 Message Date
Xu Yang 6e09dc6d69 feat: add user interaction in data science scenario (#1251)
* feat: add interactor classes and user interaction handling for experiments

* update code

* use fragment retry mechanism instead of rerun()

* fix a bug

* integrate user instructions into proposal and coder

* fix CI

* fix CI

* feat: add approval option for user instructions submission

* feat: enhance user instructions handling in Task and DSExperiment classes

* fix CI

* add user instructions into hypothesis rewrite

* add interface to command line

---------

Co-authored-by: Bowen Xian <xianbowen@outlook.com>
2025-09-18 11:10:12 +08:00
you-n-g ee8c119f31 fix: set requires_documentation_search to None to disable feature in eval (#1245) 2025-09-15 07:45:08 +08:00
you-n-g 5ba5e8356c feat: init pydantic ai agent & context 7 mcp (#1240)
* feat: init pydantic ai agent & context 7 mcp

* feat: integrate MCP documentation search into data science pipeline evaluation

* fix: disable MCP documentation search and update related docstrings and defaults

* lint

* fix: correct prompt formatting and conditional blocks in pipeline_eval section

* lint

* feat: add query method to PAIAgent for synchronous agent execution

* fix: apply nest_asyncio for agent and update context7 query method

* lint

* lint

* lint

* lint

* docs: update MCP folder docstring and rename test class in test_pydantic.py

* refactor: centralize completion kwargs logic and update pydantic_ai integration

* fixbug

* typo

* fix: bug triggered by padantic-ai version backtracking.

---------

Co-authored-by: Linlang <Lv.Linlang@hotmail.com>
2025-09-13 10:25:02 +08:00
amstrongzyf 2201a47623 fix: revert 2 commits (#1239)
* revert commit:c51a3008f897416a7416f92d1286cbbf6a2291ae. PR 1179

* Revert "fix: change runner prompts (#1223)"

This reverts commit db2ebc27d70663d6aa85e0b05d9b81f5f6443c17.

* fix ruff check error

* fix: change switch place for fix_seed_and_data_split
2025-09-11 16:14:48 +08:00
you-n-g 0daeb82d63 feat: add stdout into workspace for easier debugging (#1236)
* refactor: use get_truncated_stdout for consistent stdout handling across modules

* lint

* feat: add dump_stdout_type to DSRunnerCoSTEERSettings and use in eval

* fix: avoid circular import by moving DSRunnerEvaluator import inside method
2025-09-10 10:02:49 +08:00
amstrongzyf 5353bd31f2 fix: refine prompts and add additional package info (#1179)
* refine prompts and add additional package info

* refine prompts to be specific for GBDT models

* minor refine prompts

* use include to replace duplicate info

* refine prompts

* refactor: import DSTrace from base and remove exp_gen __init__

* lint

---------

Co-authored-by: Young <afe.young@gmail.com>
2025-08-13 23:00:23 +08:00
Jensen Lee 1b84f7b754 fix: ignore case when checking metric name (#1160)
* fix: ignore case when checking metric name

* add case-sensitive to prompts

---------

Co-authored-by: amstrongzyf <amstrongzyf@126.com>
2025-08-06 20:54:08 +08:00
Tim 35c209b092 feat: enable finetune llm (#1055)
* feat: start with previous workspace

* feat: finetune llm

* add PrevModelLoadEvaluator

---------

Co-authored-by: Young <afe.young@gmail.com>
Co-authored-by: v-jianwan <v-jianwan@microsoft.com>
Co-authored-by: you-n-g <you-n-g@users.noreply.github.com>
2025-08-06 12:24:44 +08:00
Xu Yang c111966d19 feat: refactor CoSTEER classes to use DSCoSTEER and update max seconds handling (#1156)
* feat: refactor CoSTEER classes to use DSCoSTEER and update max seconds handling

* remove useless line

* enable time_ratio_limit_to_enable_hyperparameter_tuning
2025-08-05 18:16:10 +08:00
Paul f03b1b918d feat: create Jupyter notebook pipeline file based on main.py file (#1134)
* First commit

* isort

* black

* tweak prompt

* fix for argparse

* fix typo

* add e2e

* Add test files, clean

* fix black settings

* revert

* fix trailing

* remove extra

* comment

* small fix, updated prompt

* Fix argparse

* small improvements

* fix for merge

* fix for merge
2025-08-05 18:06:57 +08:00
Jensen Lee b4117cf58a feat: add mask inference in debug mode (#1154) 2025-08-05 14:09:12 +08:00
amstrongzyf 80c953d405 fix: add metric in scores.csv and avoid reading sample_submission.csv (#1152)
* add scores.csv metric name in both task_gen and coder

* a little fix to column names

* small fix

* avoid sample submission read in task_gen

* avoid sample_submission reading in coding

* code change summary bug fix

* little update

* little refinement to eval

* refine coder and runner eval prompts

---------

Co-authored-by: Xu Yang <peteryang@vip.qq.com>
2025-08-04 19:53:08 +08:00
Xu Yang 811d4e7631 feat: enhance timeout handling in CoSTEER and DataScience scenarios (#1150)
* add prev loops to runner history

* fix evolving history

* fix bug on initializing feedback without final decision

* reformat

* refine

* add comments

* feat: enhance timeout handling in CoSTEER and DataScience scenarios

---------

Co-authored-by: Xu <v-xuminrui@microsoft.com>
2025-08-04 17:44:51 +08:00
Xu Yang 305eff1c5e feat: enhance timeout management and knowledge base handling in CoSTEER components (#1130)
* feat: enhance timeout management and knowledge base handling in CoSTEER components

* fix a little bug

* fix small bug

* fix a small bug

* Update rdagent/scenarios/data_science/loop.py

Co-authored-by: you-n-g <you-n-g@users.noreply.github.com>

* add scale check

* fix a small bug

* fix CI

* use dynamic chat_token_limit & remove repeated lines

* fix CI

* remove useless comment

* fix small bug

* update draft appendix

* fix prompt

* add code correctness as top priority

---------

Co-authored-by: you-n-g <you-n-g@users.noreply.github.com>
2025-07-31 13:06:28 +08:00
Xu Yang e0519b56ae feat: add coder check and give more time (#1127)
* feat: introduce max_seconds_multiplier for timeout management across components

* avoid using assert in test

* hot fix a very small bug

* runner multiply twice

* revert feedback change

* add a switch to longer timeout
2025-07-29 14:59:38 +08:00
you-n-g ab97dd8b77 feat: add extra_eval config and import_class for custom evaluators (#1097)
* feat: add extra_eval config and import_class for custom evaluators

* lint

* build: update litellm requirement to >=1.73 for get_valid_models

* refactor: remove *args/**kwargs from _create_embedding_inner_function signature
2025-07-20 16:31:43 +08:00
Tim 705eb07e81 chore: extend eda output (#1086) 2025-07-18 21:07:43 +08:00
Xu Yang 9b82bc10ad fix: package and timer bug (#1092)
* fix package bug & timer bug

* fix typo
2025-07-18 16:22:57 +08:00
Xu Yang 51921c2344 fix: minor fix to runtime_environment (#1089)
* minor fix to funtime_environment

* add python runtime info header
2025-07-17 19:58:06 +08:00
Xu Yang 77725913fa feat: query & cache package_info (#1083)
* feat: add package query in draft.py (not yet enabled)

* feat: integrate package query into task_gen and cache runtime environment

- Remove pkg_query modifications from draft components
- Add package declaration requirement in task_gen prompts
- Add optional packages field to CodingSketch model
- Cache runtime_environment in scenario object for loop-wide reuse
- Parse packages from LLM response and generate runtime environment dynamically

* some refinement

* feat: merge default packages with CLI args in package_info.py

* fix: code style

---------

Co-authored-by: Qizheng Li <jenssenlee@163.com>
2025-07-17 18:35:36 +08:00
you-n-g 8974704567 fix: refine prompt, equal lightgbm, discourage over hypertuning (#1072)
* feat: add mount_path parameter to run command

* feat: add runtime environment info and dynamic timeouts to DS runners
2025-07-15 21:58:19 +08:00
Tim e610fcaa57 fix: error in prompt template (#1065)
* fix prompt error

* fix prompt error
2025-07-12 09:32:46 +08:00
Yuante Li 76fcbbf64f refactor: try to convert the DS coder prompt into automaton logic (#1052)
* try to convert the DS coder prompt into automaton logic

* refine

* refine coder

* refine eval

* polish eval

* changes to pipeline_coder_system

* refine eval.py

* merge eval guidelines and steps

* fix a small bug

---------

Co-authored-by: Xu <v-xuminrui@microsoft.com>
Co-authored-by: amstrongzyf <amstrongzyf@126.com>
2025-07-11 21:42:52 +08:00
Xu Yang da67df19a4 feat: add sample submission file check (#1053)
* check sample submission & add  package constraint

* add trace.log into clear

* change default

* simplify

* clear CI workspace before running

* move to CI

* use sudo to clean workspace

* move prepare out of global var

---------

Co-authored-by: Xu Yang <xuyang1@microsoft.com>
2025-07-10 18:10:32 +08:00
Xu Yang ece86d7d51 fix: split then sample & remove simple model guide in ds proposal (#1034)
* fix code timeout & split_then_sample

* change- code

* change-prompts_v2

* remove more simple guidance in proposal

---------

Co-authored-by: Xu Yang <xuyang1@microsoft.com>
Co-authored-by: jingyuanlm <842442862@qq.com>
2025-07-09 15:47:37 +08:00
you-n-g e0ba3b0eee refactor: add string validation for feedback attrs and remove unused var (#1035) 2025-07-08 20:24:31 +08:00
Roland Minrui 6f3a44c18a fix: add spec for hyperparameters in task design and coder (#995)
* init commit

* remove the 5-fold spec from prompts

* refine the hyperparameter specification

* do not sample data

* a small spelling issue

* refine prompt to avoid submission cheating

* do not sample data

* simplify code

* refine the coder evaluator prompt

* refine wording

* remove runtime from proposal

* refine wording

* refine prompt

* add gpu info in runtime_info.py

* modify the spec

* add router and add refinement exp gen

* fix prompt bug

* use rule-based logic for router

* complete the prompt

* fix circular import bug

* fix bug

* make refine_decision optional

* update pipeline prompts: (1) add scenary: in an iterative cooding loop and use sample datasets (2)add some generation tops in coding (3)add evaluation guidelines in evaluation (4)polish the json schema and description

* fix a small bug

* fix a small bug

* rdagent/scenarios/data_science/loop.py back to the original version

* refactor: replace _get_exp_gen with default_exp_gen for exp generation

* import

* refactor: make the __init__ back to main

* fix small bugs

* fix bugs for proposal_version

* move refine into runner

* check early stop

* EDA improvement & coder classes number

* fix CI

* slightly refine the prompt

* remove rule_base_eval and remove useless prompt

---------

Co-authored-by: Xu <v-xuminrui@microsoft.com>
Co-authored-by: TPLin22 <tplin2@163.com>
Co-authored-by: amstrongzyf <amstrongzyf@126.com>
Co-authored-by: Xu Yang <peteryang@vip.qq.com>
Co-authored-by: Xu Yang <xuyang1@microsoft.com>
Co-authored-by: Young <afe.young@gmail.com>
2025-07-08 15:22:39 +08:00
Xu Yang d0afa599a7 feat: try coder on whole data (#1017)
* commit all code

* fix feedback bug

* add debug mode in ds

* update prompt

* prioritize performance than time lit

* use run instead

* store running time

* move all data running into running phase

* fix a bug

* use sample data as default

---------

Co-authored-by: Xu Yang <xuyang1@microsoft.com>
2025-07-04 14:30:40 +08:00
Yuante Li fb8f2b561e fix: fix a minor bug in DS eval (#1012) 2025-07-02 23:31:29 +08:00
Yuante Li 667af3e1ea feat: added running time statistics for the DS scenario experiment (#1007)
* added running time statistics for the DS scenario experiment

* update execute_ret_code to return running_time

* fix

* fix

* update describe

* add EnvResult

* update corresponding calls

* add RunningInfo class

* fix

* fix

* fix

* fix ci

* rename function name

* fix ci

* fix

* refine running_time logic

* fix ci
2025-07-02 15:11:18 +08:00
you-n-g cd237292ea feat: add hide_base_name option and update data folder prompts (#1004)
* feat: add hide_base_name option and update data folder prompts

* rename folder
2025-06-29 21:22:16 +08:00
you-n-g b60f5fc506 fix: refine details (#979)
* feat: add parquet preview and extract common DataFrame preview logic

* refactor: improve error messages, prompts, regex, and session loading

* lint
2025-06-23 10:38:27 +08:00
Xu Yang 89a39b9396 fix: merge datascience v3 and v2 (#974)
* add coder version

* merge cooder and feedback prompts

* align v2 and v3 proposal prompts

* fix a small bug

* fix a bug

* fix another bug

* support both function calling and json mode in v2 proposal

* fix minor bug

* reformat

* remove proposal v3

* fix a small bug in json mode

* fix CI

* remove tmp file

* remove v3 check

---------

Co-authored-by: Xu Yang <xuyang1@microsoft.com>
2025-06-19 13:25:10 +08:00
Yuge Zhang 74fe166687 feat: new proposal (structured outputs) prompts (#887)
* some initial modifications

* first prompt

* refine prompts

* isolate to v3 exp gen

* Revert prompts

* Add hypothesis

* task gen prompt

* minor updates

* minor updates

* update proposal

* Move the pydantic schema upfront to avoid loading error

* Update first prompts

* New prompt

* Update prompt

* Update data folder

* .

* Revert changes

* support v3 in pipeline and feedback

* sort imports

* black format

* Update rdagent/scenarios/data_science/dev/prompts.yaml

Co-authored-by: you-n-g <you-n-g@users.noreply.github.com>

---------

Co-authored-by: Xu Yang <peteryang@vip.qq.com>
Co-authored-by: you-n-g <you-n-g@users.noreply.github.com>
2025-05-22 15:08:33 +08:00
Roland Minrui b8fb9cf3b4 fix coder bug (#868)
Co-authored-by: Xu <v-xuminrui@microsoft.com>
2025-05-12 17:20:26 +08:00
xuangu-fang bb96fc84f6 feat: advanced checkpoint selectors (#790)
* rebase selection code

* bug-free run: checkpoint selection and dynamic EDA loading

* add prototypes of various selectors, to imp. and test later

* fix EDA write bug

* imp SOTA-Jump policy

* fix small bug

* allow to set different selector by .env

* add always-win selector

* add init length for AlwaysWinCKPSelector

* add back_jump selector

* auto lint

* add sota_exp_to_submit attribute; change the name of ckp_selector and sota-selector

* fix bug

* auto lint

* working on auto sota selector

* add subtrace counter

* fix bug, remove unuse selector

* add auto sota selector

* auto lint

* fix bug

* fix small logic bug

* add logging

* add inject_diverse feat

* auto lint

* capable to None-select

* feat: add hypothesis_gen config and ExpGen2TraceAndMerge functionality

* refactor: use dynamic import for experiment generator instantiation

* feat: add BestValidSelector for improved SOTA experiment selection

* runnable twin-trace version

* fix logic error of trace-merge

* auto lint

* use import_class to set selector,

* auto-lint

---------

Co-authored-by: Young <afe.young@gmail.com>
2025-05-09 15:38:25 +08:00
Tim 46dec7b624 feat: custom data (#810)
* custom data

* fix: simplify competition check and log local description file

* no sample data

* feat: add test evaluation module with error handling support

* fix: update eval path to use eval_sub_dir and add valid_check TODO

* refactor: add MLETestEval check to conditionally run grading steps

* avoid blank stdout

* valid in testeval

* rename test.csv to avoid conflict

* Support Disabling sample submission

* refactoring

* fix: remove DS_KAGGLE_DATA and update prompt instructions

* add try for grade

* ignore submission

* fix: remove tee from eval command and warn about pipeline exit code detection

* optional to use raw description

* support old data

* add execution result to stdout

* add metric to raw description

* custom data explain

* add debug_path

* rst update

---------

Co-authored-by: Young <afe.young@gmail.com>
2025-05-06 16:00:13 +08:00
Haoran Pan acc15caf7b feat: reanalyze competition info & pipeline coding evaluator prompt (#837)
* update coding evaluator prompt similar to feedback

* reanaylyzing competition description when three sonsecutive coding failures

* update reanalyzing competition implementation

* fix bug

* update prompts and reanalyze

* fix bugs

* ci issue

* improve some code

* fix CI

---------

Co-authored-by: Xu Yang <peteryang@vip.qq.com>
Co-authored-by: Xu Yang <xuyang1@microsoft.com>
2025-04-30 17:36:35 +08:00
you-n-g d46d27375d refactor: use remove_eda_part for EDA cleanup, fix diff eval (#800) 2025-04-17 16:19:26 +08:00
you-n-g a974dd9ba3 refactor: use dynamic input path and update template loader (#792)
* refactor: use dynamic input path and update template loader

* fix: update include syntax for data source in prompts.yaml

* add customization path

* docs: update prompts for ensemble scoring and metric direction

* chore: remove obsolete data_science/share.yaml file
2025-04-16 18:11:46 +08:00
you-n-g e05a645ad4 feat: refine prompt (#760)
* style: Simplify language and improve clarity in prompts and share.yaml

* style: Update prompt wording for clarity in raw_data_loader

* style: Simplify conditional logic in task_gen system prompt

* refactor: Update prompts and proposal for component output format handling

* fix: Correct grammar and add clarification in prompts.yaml

* feat: Include coding guidelines in data science component prompts

* lint
2025-04-16 09:35:30 +08:00
Tim a6ae88fb42 chore: fit more competition (#723)
1. Remove potential <code> tags from the generated code.
2. Use return codes in data_loader, feature, and model.
3. Configure the debug timeout.
2025-04-10 17:56:57 +08:00
you-n-g bbc591b401 feat: dump model (#776)
* feat: add model dump flag and multi-evaluator support

* tmp code

* refactor: update evaluator feedback and FBWorkspace types

* feat: add get_clear_ws_cmd and CPU count in Docker environment

* feat: Add model dump check level and enhance evaluator functionality

fix data type bug

* fix: Ensure required files exist before model dump evaluation

* refactor: streamline prompt and file checks in model dump evaluation

* fix: add assertions and reorder file reads in model dump evaluator

* feat: remove EDA part from evaluation output

* docs: update dump_model guidelines and eval prompt to include template

* style: reformat multiline dicts and lists in conf and eval files

* fix: add DOTALL flag to EDA removal regex
2025-04-09 23:24:12 +08:00
xuangu-fang fd155d1fa8 feat: checkpoint selection (#744)
* rebase selection code

* bug-free run: checkpoint selection and dynamic EDA loading

* add prototypes of various selectors, to imp. and test later

* fix EDA write bug

* move selector to from proposal.py tp seletc.py

* auto lint

* fix line-too-long typos

* aligh the design of "selection", rm extra instance check

* make auto-lint

* add non-trival selector: SOTAjump
2025-04-09 09:42:30 +08:00
Xu Yang f092739ab5 add rule-based eval to speed up the whole process (#768) 2025-04-08 17:27:21 +08:00
XianBW e7f3cf97ec fix: duplicate model names test in pipeline coder & runner (#763)
* add model name duplicate test in pipeline costeer

* fix ci
2025-04-07 19:06:42 +08:00
you-n-g 6be6b8408f feat: add naive experiment generator and update proposal configurations (#759)
* feat: Add naive experiment generator and update proposal configurations

* lint

* lint
2025-04-07 13:01:29 +08:00
Yuante Li 0a75a4d987 feat: add a check for whether values in score_df are NaN (#756)
* add a check for whether values in score_df are NaN

* fix ci

* change raise to assert
2025-04-04 22:44:55 +08:00
Roland Minrui 6cc1e5da3c feat: add pipeline coder (#742)
* init commit

* limit problem numbers

* ensemble lower case

* add runtime and spec to coder

* submission check notice

* sub EDA in sample execution

* avoid lightgbm

* add time limit to scenario

* rephrase the submission check

* give positive feedback when facing warning in check

* ENABLE FEEDBACK

* fix feedback bug

---------

Co-authored-by: Xu Yang <peteryang@vip.qq.com>
2025-04-03 13:00:11 +08:00