The previous "fix" introduced pd.read_pickle(encoding="utf-8", "/path")
which is a SyntaxError (positional argument after keyword argument).
pd.read_pickle() has no encoding parameter.
Replace with correct # nosec B301 comment — pickle is safe here because
the files are written by the Kaggle preprocessing pipeline in a sandboxed
container and never sourced from user input.
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
- B301 (pickle): add nosec B301 to pd.read_pickle calls in Kaggle templates
— files are trusted Kaggle-environment inputs, not user-supplied
- B614 (torch.load): add weights_only=True to all torch.load calls in
model benchmark GT code and gt_code.py
- B104 (binding 0.0.0.0): change run_server and CLI default to 127.0.0.1;
add nosec comment where all-interface binding is required for Docker
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
* fix model input shape bug and costeer_model bug
* fix a bug
* fix a bug in docker result extraction
* a system-level optimization
* add a filter of stdout
* update
* add stdout to model
* model training_hyperparameters update
* quant scenario
* update some quant settings
* llm choose action
* Thompson Sampling Bandit for action choosing
* refine both scens
* add trace messages for quant scen
* fix some bugs
* fix some bugs
* update
* update
* update
* fix
* fix
* fix
* update for merge
* fix ci
* fix some bugs
* fix ci
* fix ci
* fix ci
* fix ci
* refactor
* default qlib4rdagent local env downloading
* fix ci
* fix ci
* fix a bug
* fix ci
* fix: align all prompts on template (#908)
* use template to render all prompts
* fix CI
---------
Co-authored-by: Xu Yang <xuyang1@microsoft.com>
* add fin_quant in cli
* fix a bug
* fix ci
* fix some bugs
* refactor
* remove the columns in hypothesis if no value generated in this column
* fix a bug
* fix ci
* fix conda env
* add qlib gitignore
* remove existed qlib folder & install torch in qlib conda
* fix workspace ui in feedback
* align model config in coder and runner in docker or conda
* fix CI
* fix CI
---------
Co-authored-by: Xu Yang <peteryang@vip.qq.com>
Co-authored-by: Xu Yang <xuyang1@microsoft.com>
* update metric_name
* fix some bugs
* add an evaluation in workflow
* add an evalution in runner
* fix ci
* test change
* fix CI
---------
Co-authored-by: TPLin22 <tplin2@163.com>
Co-authored-by: yuanteli <1957922024@qq.com>
* move cache auto continue and retry to all api backend
* add type checker to json mode output
* fix CI
* feat: Add json_mode handling and streaming support in chat completion function
* lint
* fix a bug when returning a dict which value could contain int or bool
* remove litellm
---------
Co-authored-by: Xu Yang <xuyang1@microsoft.com>
Co-authored-by: Young <afe.young@gmail.com>
* refine ds modal for more cases: eval and es
* update model template
* prompts for model and ensemble
* fix a bug
* fix a bug
* init: ds workflow evovingstrategy
* Adding ensemble (#505)
* Initial Draft
* Updating logic for init
* Revising
* Successful Testing
* Updating to use the latest & right class
* bug: bug-fixing for testing
* data science loop changes
* data science loop base
* ds loop feedback
* fix
* remove measure_time because it's duplicated (in LoopBase)
* add the knowledge query for data_loader & feature
* edit ds workflow evaluator
* data_loader bug fix
* stop evolving when all tasks completed
* llm app change
* fix break all complete strategy
* Adding queried knowledge (#508)
Co-authored-by: XianBW <36835909+XianBW@users.noreply.github.com>
* fix loop bug
* ds workflow evaluator; test; refine prompts
* workflow spec
* fix ci
* feature task changes
* ds loop change
* fix a bug in feat
* add query knowledge for model and workflow
* llm_debug info(for show) using pickle instead of json
* remove NextLoopException
* loop change
* coder raise CoderError when all sub_tasks failed
* rename code_dict to file_dict in FBWorkspace
* add CoSTEER unittest
* now show self.version in Task.get_task_information(), simplify CoSTEER sub tasks definition
* remove some properties in ModelTask, add model_type in it.
* fix llm app bug
* llm web app bug fix
* ds loop bug fix
* fix: give component code to feature&ens eval
* loop catch error bug
* rename load_from_raw_data to load_data
* feat: Add debug data creation functionality for data science scenarios
* support local folder (#511)
* support local folder
* remove unnecessary random
* KaggleScen Subclass
* small fix
* use template for style description
* update default scen to kaggle
* update sample data script
* make sure frac < 1
* fix a bug
* feature spec changes
* fix
* changeimport order
* clear unnecessary std outputs
* fix a typo
* create sample folder after unzip kaggle data
* feature/model test script update
* Align the data types across modules.
* fix a bug in model eval
* show line number
* move sample entry point to app
* spec & model prompt changes
* Refine the competition specification to address the data type problem and the coherence issue.
* fix some bugs
* add file filter in FBworkspace.code property
* support non-binary prediction
* avoid too much warnings
* fix a bug in ensemble module
* filtered the knowledge query in all modules
* delete RAG in idea proposal
* refine the code in ensemble
* show exp workspace in llm_st
* exp_gen bug fix
* feedback bug fix
* use `feature` instead of `feat01`
* Trace & method of judging if exp is completed change
* fix a bug in package calling and execute ci
* fix code
* bug fix
* bug fix
* fix a bug
* fix some bugs
* fix a bug
* refactor: Enhance error handling and feedback in data science loop
* support different use_azure on chat and embedding models
* multi-model proposal logic
* fix a small syntax error
* loopBase and some changes
* ensemble scores change
* fbworkspace.code -> .all_codes
* use all model codes in workflow coder
* check scores.csv's keys(model_names)
* model name changes
* add a todo in ensemble test
* sota_exp changes
* give model info in exp gen
* add runner time limit
* config using debug data or not in evals
* exp to feedback base
* add feature code when writing model task
* small problem
* copying during sampling
* update
* refactor: Simplify code handling and improve workspace management
* model part output fix
* print model's execution time
* bug fix
* ensemble test fix
* ens small change
* ens_test bug fix
* Refine partial expansion logic to display only a few subfolders when their structure is uniform, improving readability in nested directories.
* several update on prompts
* sample subfolders
* Filter the stdout after code execution to remove irrelevant information e.g. progress bars, whitespace characters, excessive line breaks.
* Add some more prompts and comments
* several update on the first init rounds
* model timeout as error
* fix pattern of getting model codes in workspace
* small bux fix on model prompts
* remove get_code_with_key since we have regex pattern
* fix: Correct tqdm progress bar update logic in LoopBase class
* feat: Add diff generation and enhance feedback mechanism in data science loop
* update some fix to model and workflow prompts
* refine the logic of progress bar filter
* add last_successful_exp in exp_gen
* fix a one line bug
* add a hint in prompt
* fix data sample for bms
* fix data sample for bms
* hypothesis small fix
* crawler readme update
* fix component gen
* fix bug
* annotation change
* load description.md if it exists
* refactor: Simplify SOTA description handling in feedback and prompts
* refactor: Use shared templates for feedback and experiment descriptions
* change webapp for model codes changes
* update proposal
* add timeout message for docker run output
* fix
* refine the code in docker time processing
* use .shape instead of len() when do shape eval
* won't change size during iteration
* support bson sample
* sample support jsonl and bson
* add former_code to coder prompts
* a little speed us in debug data creating
* filter progress bar when eval ens and main
* avoid costeer makes no change to former code
* fix several log error
* add timeout judge threshold
* fix some bugs in the evaluation of component output shapes
* File structure for supporting litellm (#517)
Co-authored-by: Young <afe.young@gmail.com>
* ignore submission and show processing
* ignore submission and show processing
* add efficiency notice
* refactor: Enhance error message with detailed feedback summary
* refactor: Simplify component handling in DSExpGen class
* refactor: Update code structure and add docstring for clarity
* reserve one sample to each label in data sampling
* add Evaluation info
* refine costeer code to avoid giving same code twice
* use raw_description as plain text
* add a prompt hint to avoid same dict key
* model task name bug in first model exp gen
* fix a typo
* add some debug info in costeer tests
* task init change
* enhance data sampling
* refine the code in data_loader
* more reasonable loop
* fix a bug in data folder description
* add error msg & traceback to execution feedback
* fix llm error msg detection
* add task information to costeer eval & add cache to docker run(use zipfile to store the whole workspace)
* fix CI first round
* fix CI second round
* use txt to store test script to avoid pytest
* remove zipfile in requirements
* add azure.identity to requirements
* ignore debug web page
* component test changes
* remove redundent task_desc in model coder
* feat: Add APE module and prompts for automated prompt engineering
* fix: Update .gitignore and improve text formatting in eval.py
* refactor: Update print output and improve code comments and imports
* style: Fix string formatting and import order in ape.py and fmt.py
* exclude ape
* add a data folder notice
* reduce unnecessary output to stdout
* refine the code of describe_data_folder
* fix ci
* style: streamlit style update (#522)
* streamlit style update
* fix import
* fix format
* fix llm_st loop progress bar
* debugapp small change
* fix model str
* refine some prompts
* fix model str
* fix CI
* refine the logic associated with the data_folder
* fix ci
* small change
* set filter_progress_bar as default in execute
* model proposal with workflow
* add submission check in workflow eval
* fix bug
* small change
* fix CI
* fix CI
* refactor: Move generate_diff to utils and update DSExpGen logic
* more reasonable prompt describing metric direction
* fix a minor jinja2 bug
* quick fix exp_gen bugs
* fix the following bug
* fix
* fix some bugs
* remove workflow from model
* add pending_tasks_list in data science to enable coding model and workflow
* refine the code for handling JSON-formatted data descriptions
* assert with information
* ensure correct csv file name
* add logging to help record the output
* log competition
* add log tag for debug llm app
* test: Test ds refactor ll (#523)
* fix bugs to former scenario
* fix a bug because coding in rdloop changed
* fix the bug when feedback gets no hypothesis
* fix trace structure
* change all trace hist when merging hypothesis to experiments
* ignore some error in ruff
* fix kaggle scenario bugs
* refine one line
* another bug
* another small bug
* fix ui bugs
* chage kaggle train.py path
---------
Co-authored-by: Xu Yang <peteryang@vip.qq.com>
* fix CI
* Update rdagent/app/data_science/loop.py
Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
* add samplecsv into spec prompts
* fix CI
---------
Co-authored-by: TPLin22 <tplin2@163.com>
Co-authored-by: yuanteli <1957922024@qq.com>
Co-authored-by: Xisen Wang <118058822+xisen-w@users.noreply.github.com>
Co-authored-by: Bowen Xian <xianbowen@outlook.com>
Co-authored-by: Xu Yang <peteryang@vip.qq.com>
Co-authored-by: XianBW <36835909+XianBW@users.noreply.github.com>
Co-authored-by: Tim <illking@foxmail.com>
Co-authored-by: 炼金术师华华 <37462254+YeewahChan@users.noreply.github.com>
Co-authored-by: Linlang <30293408+SunsetWolf@users.noreply.github.com>
Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
* Use ExtendedBaseSettings to replace BaseSettings
* update a more general way to pass the default setting
* update all code
* fix CI
* fix CI
* fix qlib scenario
* fix CI
* fix CI
* fix CI & add data science interfaces
* remove redundant code
* abandon costeer knowledge base v1
---------
Co-authored-by: Xu Yang <xuyang1@microsoft.com>
Co-authored-by: XianBW <36835909+XianBW@users.noreply.github.com>
* init trail
* Add spec info
* auto unzip mlebench prepared data for out scenario
* successfully run example
* successfully run main
* simplify load traing
* extract load_from_raw_data
* split the fies(still buggy)
It should stop on ~20 epoch and reach the end
* some changes
* Fix bug to run example
* (success) until feature
* refine model and ensemble
* add metrics in ens.py
* update README & spec.md
* ens change
* fix ens bug
* Delete rdagent/scenarios/kaggle/tpl_ex/aerial-cactus-identification/train.py
* add template_path in KG_conf
* fix test kaggle
* CI
* make test_import not check kaggle template codes
---------
Co-authored-by: Bowen Xian <xianbowen@outlook.com>
* copy init version
* feat: new-york-city-taxi-fare-prediction_template
* add move to linear model
* Add more details about docker
* auto lint
* auto lint with new black
* several improvement on kaggle loop
* small refinement on prompt
* fix bugs
* add the score of each model in every experiment
* fix ci error
* fix error in ventilator tpl
* fix CI
---------
Co-authored-by: Xu Yang <xuyang1@microsoft.com>
Co-authored-by: Bowen Xian <xianbowen@outlook.com>
Co-authored-by: WinstonLiye <1957922024@qq.com>
Co-authored-by: TPLin22 <tplin2@163.com>
* udpate plot
* log and reduce token
* trace tag
* add simple_background parameter to get_scenario_all_desc
* update trace
* update first version code
* chat model map
* add annotation for stack index
* add annotation
* reformatted by black
* several update on kaggle scenarios
* update some new change
* fix CI
* fix CI
* fix a bug
* fix bugs in graph RAG
---------
Co-authored-by: Tim <illking@foxmail.com>
* Fixes on kaggle output
* feat: add kaggle s3e14 template (#394)
* add s3e14 template
* fix CI
* Initialisation of a template of competition
* add kaggle s3e16 template (#396)
* get kaggle competition scores (#397)
* Adding a new competition s4e6
* feat: s4e5 (#400)
* init for s4e5
* edit s4e5
* ci issue
* feat: S4e3 (#402)
* Initialisation of a template of competition
* Adding a new competition s4e6
* Competition Initialised
* Fixed to make sure that now it runs
* Fixing for CI
* correct evaluation (#403)
* find rank in leaderboard (#405)
* fix: model templates for KG scenario (#408)
* fix feature selection for some models
* feat select template
* Updating the prompts for a more powerful model tuning
* refine the prompt
* fix: template error in s4e6
* feat: show simple execution time in demo (#410)
* show time in kaggle demo
* change color
* fix a small bug
* edit loop.py and proposal
* delete useless files
* CI issues
* ci issue
---------
Co-authored-by: XianBW <36835909+XianBW@users.noreply.github.com>
Co-authored-by: Haoran Pan <167847254+TPLin22@users.noreply.github.com>
Co-authored-by: Way2Learn <118058822+Xisen-Wang@users.noreply.github.com>
Co-authored-by: WinstonLiyt <1957922024@qq.com>
Co-authored-by: TPLin22 <tplin2@163.com>
* crawl notebooks & change to DS-Agent format text
* give one function in kaggle_crawler to collect kaggle knowledge texts
* fix CI
* add tool for merge .py files to one py file
* fix CI
* delete files
* changes for select function
* add nbformat
* jump crawler import test
* del test code
* CI
* change
* change
* change
* rename meta_tpl
* use a isolated coder to deal with model feature selection and refine the structure
* fix CI
* fix: fix some errors in scenario.py, proposal.py and runner.py and several complex competition scenarios(#365)
* fix several bugs in proposal and runner
* fix a bug in feedback-prize-english-language-learning
* fix some bugs and templates
* fix the bug in optiver and nlp problem
* delete unnecessary codes
* remove unnecessary codes
* complete forest and s4e8
* push
* feedback & s4e8 & forest
* optiver finished
* s3e11 & s3e26
* s4e9 finished
* sf-crime finished
* the last one finished
---------
Co-authored-by: WinstonLiyt <104308117+WinstonLiyt@users.noreply.github.com>
Co-authored-by: WinstonLiyte <1957922024@qq.com>
* fix several bugs in proposal and runner
* fix a bug in feedback-prize-english-language-learning
* fix some bugs and templates
* fix the bug in optiver and nlp problem
* spaceship: format type of y = pd.series; fix a wrong spelling in xgb
* s3e11: format of y -- pd.series
* spaceship: format of y & fit nn
* spaceship: wrong spelling in xgb
* ci issue
* Adding the competition: Optiver Volatility Prediction
* Fixing for CI
* Updating a new competition @ Optiver
* re-writing the optiver competition
* Revise for better commit
* Further fixes
* Further fixes
* Fixes
* Further Fixing Optiver Template
* Fix further to pass the test
* Fixing for CI
* Fixing for CI
* Adding the competition: Optiver Volatility Prediction
* Fixing for CI
* Updating a new competition @ Optiver
* re-writing the optiver competition
* Revise for better commit
* Further fixes
* Further fixes
* Fixes
TPTBusiness