CI checks that can be automatically repaired (#119)

* fix isort & black & toml-sort & sphinx error

* fix ci error

* fix ci error

* add comments

* Update Makefile

* change sphinx build command

* add auto-lint

* add black args

* format with black

* Auto Linting document

* fix ci error

---------

Co-authored-by: you-n-g <you-n-g@users.noreply.github.com>
Co-authored-by: Young <afe.young@gmail.com>

test/utils/test_agent_infra.py

@@ -5,12 +5,8 @@ from rdagent.utils.agent.ret import PythonAgentOut
 from rdagent.utils.agent.tpl import T
 
 
-
-
 class TestAgentInfra(unittest.TestCase):
-
     def test_agent_infra(self):
-
         # NOTE: It is not serious. It is just for testing
         sys_prompt = T("components.proposal.prompts:hypothesis_gen.system_prompt").r(
             targets="targets",

test/utils/test_misc.py

@@ -9,7 +9,6 @@ class A(SingletonBaseClass):
 
 
 class MiscTest(unittest.TestCase):
-
     def test_singleton(self):
         a1 = A()
         a2 = A()