CI checks that can be automatically repaired (#119)

* fix isort & black & toml-sort & sphinx error

* fix ci error

* fix ci error

* add comments

* Update Makefile

* change sphinx build command

* add auto-lint

* add black args

* format with black

* Auto Linting document

* fix ci error

---------

Co-authored-by: you-n-g <you-n-g@users.noreply.github.com>
Co-authored-by: Young <afe.young@gmail.com>

rdagent/core/evolving_agent.py

@@ -25,14 +25,16 @@ class EvoAgent(ABC):
         evo: EvolvableSubjects,
         eva: Evaluator | Feedback,
         filter_final_evo: bool = False,
-    ) -> EvolvableSubjects: ...
+    ) -> EvolvableSubjects:
+        ...
 
     @abstractmethod
     def filter_evolvable_subjects_by_feedback(
         self,
         evo: EvolvableSubjects,
         feedback: Feedback | None,
-    ) -> EvolvableSubjects: ...
+    ) -> EvolvableSubjects:
+        ...
 
 
 class RAGEvoAgent(EvoAgent):
@@ -52,7 +54,6 @@ class RAGEvoAgent(EvoAgent):
         self.with_feedback = with_feedback
         self.knowledge_self_gen = knowledge_self_gen
 
-
     def multistep_evolve(
         self,
         evo: EvolvableSubjects,
@@ -86,7 +87,9 @@ class RAGEvoAgent(EvoAgent):
                 es.feedback = (
                     # TODO: Due to the irregular design of rdagent.core.evaluation.Evaluator,
                     # it fails mypy's test here, so we'll ignore this error for now.
-                    eva if isinstance(eva, Feedback) else eva.evaluate(evo, queried_knowledge=queried_knowledge)  # type: ignore[arg-type, call-arg]
+                    eva
+                    if isinstance(eva, Feedback)
+                    else eva.evaluate(evo, queried_knowledge=queried_knowledge)  # type: ignore[arg-type, call-arg]
                 )
                 logger.log_object(es.feedback, tag="evolving feedback")
 

rdagent/core/proposal.py

@@ -99,12 +99,12 @@ class HypothesisGen(ABC):
         # def gen(self, scenario_desc: str, ) -> Hypothesis:
         """
         Motivation of the variable `scenario_desc`:
-        - Mocking a data-scientist is observing the scenario.
+            - Mocking a data-scientist is observing the scenario.
 
-        scenario_desc may conclude:
-        - data observation:
-            - Original or derivative
-        - Task information:
+        scenario_desc may include:
+            - data observation:
+                - Original or derivative
+            - Task information:
         """
 
 

rdagent/core/utils.py

@@ -18,6 +18,7 @@ class SingletonBaseClass:
     Because we try to support defining Singleton with `class A(SingletonBaseClass)`
     instead of `A(metaclass=SingletonMeta)` this class becomes necessary.
     """
+
     _instance_dict: ClassVar[dict] = {}
 
     def __new__(cls, *args: Any, **kwargs: Any) -> Any:
@@ -34,7 +35,6 @@ class SingletonBaseClass:
         return cls._instance_dict[kwargs_hash]
 
 
-
 def parse_json(response: str) -> Any:
     try:
         return json.loads(response)