CI checks that can be automatically repaired (#119)

* fix isort & black & toml-sort & sphinx error

* fix ci error

* fix ci error

* add comments

* Update Makefile

* change sphinx build command

* add auto-lint

* add black args

* format with black

* Auto Linting document

* fix ci error

---------

Co-authored-by: you-n-g <you-n-g@users.noreply.github.com>
Co-authored-by: Young <afe.young@gmail.com>

rdagent/app/data_mining/conf.py

@@ -1,6 +1,5 @@
 from pathlib import Path
 
-
 from rdagent.components.workflow.conf import BasePropSetting
 
 
@@ -19,11 +18,11 @@ class PropSetting(BasePropSetting):
 
     evolving_n: int = 10
 
-    # 2) Extra config for the scenario 
+    # 2) Extra config for the scenario
     # physionet account
     # NOTE: You should apply the account in https://physionet.org/
-    username: str = ''
-    password: str = ''
+    username: str = ""
+    password: str = ""
 
 
 PROP_SETTING = PropSetting()

rdagent/app/data_mining/model.py

@@ -1,8 +1,10 @@
 import fire
+
 from rdagent.app.data_mining.conf import PROP_SETTING
 from rdagent.components.workflow.rd_loop import RDLoop
 from rdagent.core.exception import ModelEmptyError
 
+
 class ModelRDLoop(RDLoop):
     skip_loop_error = (ModelEmptyError,)