chore: refine get_summary_df and sota exp stat in log utils (#1201)

* add best valid selector to get sota exp stat

* remove unused in summary & refine get_summary_df

* fix hypothesis table bug in trace
This commit is contained in:
XianBW
2025-08-26 18:31:21 +08:00
committed by GitHub
parent a829b2aaea
commit 3df94e920c
4 changed files with 122 additions and 144 deletions
+100 -104
View File
@@ -22,6 +22,9 @@ from rdagent.log.ui.conf import UI_SETTING
from rdagent.log.utils import extract_json, extract_loopid_func_name
from rdagent.oai.llm_utils import md5_hash
from rdagent.scenarios.data_science.experiment.experiment import DSExperiment
from rdagent.scenarios.data_science.proposal.exp_gen.select.submit import (
BestValidSelector,
)
from rdagent.scenarios.kaggle.kaggle_crawler import get_metric_direction
LITE = [
@@ -158,13 +161,28 @@ def map_stat(sota_mle_score: dict | None) -> str:
return sota_exp_stat
def _get_sota_exp_stat_hash_func(log_path: Path, to_submit: bool = True) -> str:
return _log_path_hash_func(log_path) + str(to_submit)
@cache_with_pickle(_log_path_hash_func, force=True)
def get_best_report(log_path: Path) -> dict | None:
log_storage = FileStorage(log_path)
mle_reports = [extract_json(i.content) for i in log_storage.iter_msg(pattern="**/running/mle_score/*/*.pkl")]
mle_reports = [report for report in mle_reports if report is not None and not pd.isna(report["score"])]
if mle_reports:
lower_better = mle_reports[0]["is_lower_better"]
if lower_better:
mle_reports.sort(key=lambda report: report["score"])
else:
mle_reports.sort(key=lambda report: report["score"], reverse=True)
return mle_reports[0]
return None
def _get_sota_exp_stat_hash_func(log_path: Path, selector: Literal["auto", "best_valid"] = "auto") -> str:
return _log_path_hash_func(log_path) + selector
@cache_with_pickle(_get_sota_exp_stat_hash_func, force=True)
def get_sota_exp_stat(
log_path: Path, to_submit: bool = True
log_path: Path, selector: Literal["auto", "best_valid"] = "auto"
) -> tuple[DSExperiment | None, int | None, dict | None, str | None]:
"""
Get the SOTA experiment and its statistics from the log path.
@@ -173,8 +191,8 @@ def get_sota_exp_stat(
----------
log_path : Path
Path to the experiment log directory.
to_submit : bool, default True
If True, returns sota_exp_to_submit; if False, returns common SOTA experiment.
selector : Literal["auto", "best_valid"], default "auto"
If "auto", returns sota_exp_to_submit; if "best_valid", returns sota selected by best valid score.
Returns
-------
@@ -192,19 +210,19 @@ def get_sota_exp_stat(
log_storage = FileStorage(log_path)
# get sota exp
sota_exp_list = [
i.content for i in log_storage.iter_msg(tag=("sota_exp_to_submit" if to_submit else "SOTA experiment"))
]
if len(sota_exp_list) == 0:
# if no sota exp found, try to find the last trace
sota_exp = None
if selector == "auto":
sota_exp_list = [i.content for i in log_storage.iter_msg(tag="sota_exp_to_submit")]
sota_exp = sota_exp_list[-1] if sota_exp_list else None
elif selector == "best_valid":
trace_list = [i.content for i in log_storage.iter_msg(tag="trace")]
final_trace = trace_list[-1] if trace_list else None
if final_trace is not None:
sota_exp = final_trace.sota_exp_to_submit if to_submit else final_trace.sota_experiment(search_type="all")
else:
sota_exp = None
else:
sota_exp = sota_exp_list[-1]
if trace_list:
final_trace = trace_list[-1]
final_trace.scen.metric_direction = get_metric_direction(
final_trace.scen.competition
) # FIXME: remove this later.
bvs = BestValidSelector()
sota_exp = bvs.get_sota_exp_to_submit(final_trace)
if sota_exp is None:
return None, None, None, None
@@ -240,7 +258,7 @@ def _get_score_stat_hash_func(log_path: Path, sota_loop_id: int) -> str:
@cache_with_pickle(_get_score_stat_hash_func, force=True)
def get_score_stat(log_path: Path, sota_loop_id: int) -> tuple[float | None, bool]:
def get_score_stat(log_path: Path, sota_loop_id: int) -> tuple[float | None, float | None, bool, float | None]:
"""
Get the scores before and after merge period.
@@ -268,14 +286,10 @@ def get_score_stat(log_path: Path, sota_loop_id: int) -> tuple[float | None, boo
test_before_merge = []
valid_after_merge = []
test_after_merge = []
all_report = []
submit_is_merge = False
best_is_merge = False
is_lower_better = False
valid_improve = False
test_improve = False
best_score = None
best_stat = None
total_merge_loops = 0
log_storage = FileStorage(log_path)
all_trace = list(log_storage.iter_msg(tag="trace"))
@@ -312,20 +326,15 @@ def get_score_stat(log_path: Path, sota_loop_id: int) -> tuple[float | None, boo
is_lower_better = mle_score.get("is_lower_better", False)
valid_score = pd.DataFrame(exp.result).loc["ensemble"].iloc[0]
all_report.append((valid_score, mle_score))
if is_merge:
valid_after_merge.append(valid_score)
test_after_merge.append(mle_score["score"])
if mle_score["score"] is not None:
test_after_merge.append(mle_score["score"])
else:
valid_before_merge.append(valid_score)
test_before_merge.append(mle_score["score"])
if all_report:
all_report.sort(key=lambda x: x[0])
best_score_dict = all_report[0][1] if is_lower_better else all_report[-1][1]
best_stat = map_stat(best_score_dict)
best_score = best_score_dict["score"]
if mle_score["score"] is not None:
test_before_merge.append(mle_score["score"])
if is_lower_better:
if valid_after_merge:
@@ -339,7 +348,7 @@ def get_score_stat(log_path: Path, sota_loop_id: int) -> tuple[float | None, boo
test_improve = not test_before_merge or max(test_after_merge) > max(test_before_merge)
merge_sota_rate = 0 if not total_merge_loops else len(test_after_merge) / total_merge_loops
return best_score, best_stat, valid_improve, test_improve, submit_is_merge, merge_sota_rate
return valid_improve, test_improve, submit_is_merge, merge_sota_rate
@cache_with_pickle(_log_path_hash_func, force=True)
@@ -394,19 +403,17 @@ def load_times_info(log_path: Path) -> dict[int, dict[str, dict[Literal["start_t
return times_info
def _log_folders_summary_hash_func(log_folders: list[str], hours: int | None = None):
hash_str = ""
for lf in log_folders:
summary_p = Path(lf) / (f"summary.pkl" if hours is None else f"summary_{hours}h.pkl")
if summary_p.exists():
hash_str += str(summary_p) + str(summary_p.stat().st_mtime)
else:
hash_str += f"{summary_p} not exists"
def _log_folders_summary_hash_func(log_folder: str | Path, hours: int | None = None):
summary_p = Path(log_folder) / (f"summary.pkl" if hours is None else f"summary_{hours}h.pkl")
if summary_p.exists():
hash_str = str(summary_p) + str(summary_p.stat().st_mtime)
else:
hash_str = f"{summary_p} not exists"
return md5_hash(hash_str)
@cache_with_pickle(_log_folders_summary_hash_func, force=True)
def get_summary_df(log_folders: list[str], hours: int | None = None) -> tuple[dict, pd.DataFrame]:
def get_summary_df(log_folder: str | Path, hours: int | None = None) -> tuple[dict, pd.DataFrame]:
"""Process experiment logs and generate summary DataFrame.
Several key metrics that need explanation:
@@ -426,79 +433,68 @@ def get_summary_df(log_folders: list[str], hours: int | None = None) -> tuple[di
and overfitting risk, totally decided by LLM
"""
summarys = {}
if hours is None:
sn = "summary.pkl"
log_folder = Path(log_folder)
sn = "summary.pkl" if hours is None else f"summary_{hours}h.pkl"
if (log_folder / sn).exists():
summary: dict = pd.read_pickle(log_folder / sn)
else:
sn = f"summary_{hours}h.pkl"
for lf in log_folders:
if (Path(lf) / sn).exists():
summarys[lf] = pd.read_pickle(Path(lf) / sn)
if len(summarys) == 0:
return {}, pd.DataFrame()
summary = {}
for lf, s in summarys.items():
for k, v in s.items():
stdout_p = Path(lf) / f"{k}.stdout"
if stdout_p.exists():
v["script_time"] = get_script_time(stdout_p)
else:
v["script_time"] = None
for k, v in summary.items():
stdout_p = log_folder / f"{k}.stdout"
if stdout_p.exists():
v["script_time"] = get_script_time(stdout_p)
else:
v["script_time"] = None
times_info = load_times_info(Path(lf) / k)
times_info = load_times_info(log_folder / k)
exp_gen_time = coding_time = running_time = timedelta()
start_times, end_times = [], []
exp_gen_time = coding_time = running_time = timedelta()
start_times, end_times = [], []
for loop_times in times_info.values():
for step_name, step_time in loop_times.items():
duration = step_time["end_time"] - step_time["start_time"]
start_times.append(step_time["start_time"])
end_times.append(step_time["end_time"])
for loop_times in times_info.values():
for step_name, step_time in loop_times.items():
duration = step_time["end_time"] - step_time["start_time"]
start_times.append(step_time["start_time"])
end_times.append(step_time["end_time"])
if step_name == "exp_gen":
exp_gen_time += duration
elif step_name == "coding":
coding_time += duration
elif step_name == "running":
running_time += duration
if step_name == "exp_gen":
exp_gen_time += duration
elif step_name == "coding":
coding_time += duration
elif step_name == "running":
running_time += duration
all_time = (max(end_times) - min(start_times)) if start_times else timedelta()
v["exec_time"] = str(all_time).split(".")[0]
v["exp_gen_time"] = str(exp_gen_time).split(".")[0]
v["coding_time"] = str(coding_time).split(".")[0]
v["running_time"] = str(running_time).split(".")[0]
all_time = (max(end_times) - min(start_times)) if start_times else timedelta()
v["exec_time"] = str(all_time).split(".")[0]
v["exp_gen_time"] = str(exp_gen_time).split(".")[0]
v["coding_time"] = str(coding_time).split(".")[0]
v["running_time"] = str(running_time).split(".")[0]
# overwrite sota_exp_stat in summary.pkl because it may not be correct in multi-trace
sota_exp_submit, v["sota_loop_id_new"], sota_submit_report, v["sota_exp_stat_new"] = get_sota_exp_stat(
Path(lf) / k, to_submit=True
# overwrite sota_exp_stat in summary.pkl because it may not be correct in multi-trace
sota_exp_submit, v["sota_loop_id_new"], sota_submit_report, v["sota_exp_stat_new"] = get_sota_exp_stat(
log_folder / k, selector="auto"
)
sota_exp_bv, v["sota_loop_id"], sota_bv_report, v["sota_exp_stat"] = get_sota_exp_stat(
log_folder / k, selector="best_valid"
)
(
v["valid_improve"],
v["test_improve"],
v["submit_is_merge"],
v["merge_sota_rate"],
) = get_score_stat(log_folder / k, v["sota_loop_id_new"])
if sota_exp_submit is not None:
try:
sota_submit_result = sota_exp_submit.result
except AttributeError: # Compatible with old versions
sota_submit_result = sota_exp_submit.__dict__["result"]
v["sota_exp_score_valid_new"] = (
sota_submit_result.loc["ensemble"].iloc[0] if sota_submit_result is not None else None
)
(
v["sota_exp_score"],
v["sota_exp_stat"],
v["valid_improve"],
v["test_improve"],
v["submit_is_merge"],
v["merge_sota_rate"],
) = get_score_stat(Path(lf) / k, v["sota_loop_id_new"])
if sota_exp_submit is not None:
try:
sota_submit_result = sota_exp_submit.result
except AttributeError: # Compatible with old versions
sota_submit_result = sota_exp_submit.__dict__["result"]
v["sota_exp_score_valid_new"] = (
sota_submit_result.loc["ensemble"].iloc[0] if sota_submit_result is not None else None
)
v["sota_exp_score_new"] = sota_submit_report["score"] if sota_submit_report else None
# change experiment name
if "amlt" in lf:
summary[f"{lf[lf.rfind('amlt')+5:].split('/')[0]} - {k}"] = v
elif "ep" in lf:
summary[f"{lf[lf.rfind('ep'):]} - {k}"] = v
else:
summary[f"{lf} - {k}"] = v
v["sota_exp_score"] = sota_bv_report["score"] if sota_bv_report else None
v["sota_exp_score_new"] = sota_submit_report["score"] if sota_submit_report else None
summary = {k: v for k, v in summary.items() if "competition" in v}
base_df = pd.DataFrame(