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NexQuant/rdagent/log/mle_summary.py
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import pickle
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import traceback
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from collections import defaultdict
from pathlib import Path
import fire
import pandas as pd
from rdagent.core.experiment import FBWorkspace
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from rdagent.core.proposal import ExperimentFeedback
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from rdagent.log.storage import FileStorage
from rdagent.log.utils import extract_json, extract_loopid_func_name, is_valid_session
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from rdagent.log.utils.folder import get_first_session_file_after_duration
from rdagent.scenarios.data_science.experiment.experiment import DSExperiment
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from rdagent.scenarios.data_science.test_eval import (
MLETestEval,
NoTestEvalError,
get_test_eval,
)
# from rdagent.scenarios.kaggle.kaggle_crawler import score_rank
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from rdagent.utils.workflow import LoopBase
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def save_grade_info(log_trace_path: Path):
test_eval = get_test_eval()
trace_storage = FileStorage(log_trace_path)
for msg in trace_storage.iter_msg(tag="competition"):
competition = msg.content
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for msg in trace_storage.iter_msg(tag="running"):
if isinstance(msg.content, DSExperiment):
# TODO: mle_score.txt is not a general name now.
# Please use a more general name like test_score.txt
try:
mle_score_str = test_eval.eval(competition, msg.content.experiment_workspace)
trace_storage.log(
mle_score_str, tag=f"{msg.tag}.mle_score.pid", save_type="pkl", timestamp=msg.timestamp
)
except Exception as e:
print(f"Error in {log_trace_path}: {e}", traceback.format_exc())
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def save_all_grade_info(log_folder: str | Path) -> None:
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for log_trace_path in Path(log_folder).iterdir():
if is_valid_session(log_trace_path):
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try:
save_grade_info(log_trace_path)
except NoTestEvalError as e:
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print(f"Error in {log_trace_path}: {e}", traceback.format_exc())
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def _get_loop_and_fn_after_hours(log_folder: Path, hours: int):
stop_session_fp = get_first_session_file_after_duration(log_folder, f"{hours}h")
with stop_session_fp.open("rb") as f:
session_obj: LoopBase = pickle.load(f)
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loop_trace = session_obj.loop_trace
stop_li = max(loop_trace.keys())
last_loop = loop_trace[stop_li]
last_step = last_loop[-1]
stop_fn = session_obj.steps[last_step.step_idx]
print(f"Stop Loop: {stop_li=}, {stop_fn=}")
files = sorted(
(log_folder / "__session__").glob("*/*_*"), key=lambda f: (int(f.parent.name), int(f.name.split("_")[0]))
)
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print(f"Max Session: {files[-1:]=}")
return stop_li, stop_fn
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def summarize_folder(log_folder: Path, hours: int | None = None) -> None:
test_eval = get_test_eval()
is_mle = isinstance(test_eval, MLETestEval)
"""
Summarize the log folder and save the summary as a pickle file.
Args:
log_folder (Path): The path to the log folder (contains many log traces).
hours (int | None): The number of hours to stat. If None, stat all.
"""
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log_folder = Path(log_folder)
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stat = defaultdict(dict)
for log_trace_path in log_folder.iterdir(): # One log trace
if not is_valid_session(log_trace_path):
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continue
loop_num = 0
made_submission_num = 0
valid_submission_num = 0
above_median_num = 0
get_medal_num = 0
bronze_num = 0
silver_num = 0
gold_num = 0
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test_scores = {}
test_ranks = {}
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valid_scores = {}
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bronze_threshold = 0.0
silver_threshold = 0.0
gold_threshold = 0.0
median_threshold = 0.0
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success_loop_num = 0
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sota_exp_stat = ""
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sota_exp_score = None
sota_exp_rank = None
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grade_output = None
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if hours:
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stop_li, stop_fn = _get_loop_and_fn_after_hours(log_trace_path, hours)
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msgs = [(msg, extract_loopid_func_name(msg.tag)) for msg in FileStorage(log_trace_path).iter_msg()]
msgs = [(msg, int(loop_id) if loop_id else loop_id, fn) for msg, (loop_id, fn) in msgs]
msgs.sort(key=lambda m: m[1] if m[1] else -1) # sort by loop id
for msg, loop_id, fn in msgs: # messages in log trace
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if loop_id:
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loop_num = max(loop_id + 1, loop_num)
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if hours and loop_id == stop_li and fn == stop_fn:
break
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if msg.tag and "llm" not in msg.tag and "session" not in msg.tag:
if "competition" in msg.tag:
stat[log_trace_path.name]["competition"] = msg.content
# get threshold scores
workflowexp = FBWorkspace()
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if is_mle:
stdout = workflowexp.execute(
env=test_eval.env,
entry=f"mlebench grade-sample None {stat[log_trace_path.name]['competition']} --data-dir /mle/data",
)
grade_output = extract_json(stdout)
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if grade_output:
bronze_threshold = grade_output["bronze_threshold"]
silver_threshold = grade_output["silver_threshold"]
gold_threshold = grade_output["gold_threshold"]
median_threshold = grade_output["median_threshold"]
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if "running" in msg.tag:
if isinstance(msg.content, DSExperiment):
if msg.content.result is not None:
valid_scores[loop_id] = msg.content.result
elif "mle_score" in msg.tag:
grade_output = extract_json(msg.content)
if grade_output:
if grade_output["submission_exists"]:
made_submission_num += 1
if grade_output["score"] is not None:
test_scores[loop_id] = grade_output["score"]
# if is_mle:
# _, test_ranks[loop_id] = score_rank(
# stat[log_trace_path.name]["competition"], grade_output["score"]
# )
if grade_output["valid_submission"]:
valid_submission_num += 1
if grade_output["above_median"]:
above_median_num += 1
if grade_output["any_medal"]:
get_medal_num += 1
if grade_output["bronze_medal"]:
bronze_num += 1
if grade_output["silver_medal"]:
silver_num += 1
if grade_output["gold_medal"]:
gold_num += 1
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if "feedback" in msg.tag and "evolving" not in msg.tag:
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if isinstance(msg.content, ExperimentFeedback) and bool(msg.content):
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success_loop_num += 1
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if grade_output: # sota exp's grade output
if grade_output["gold_medal"]:
sota_exp_stat = "gold"
elif grade_output["silver_medal"]:
sota_exp_stat = "silver"
elif grade_output["bronze_medal"]:
sota_exp_stat = "bronze"
elif grade_output["above_median"]:
sota_exp_stat = "above_median"
elif grade_output["valid_submission"]:
sota_exp_stat = "valid_submission"
elif grade_output["submission_exists"]:
sota_exp_stat = "made_submission"
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if grade_output["score"] is not None:
sota_exp_score = grade_output["score"]
# if is_mle:
# _, sota_exp_rank = score_rank(
# stat[log_trace_path.name]["competition"], grade_output["score"]
# )
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stat[log_trace_path.name].update(
{
"loop_num": loop_num,
"made_submission_num": made_submission_num,
"valid_submission_num": valid_submission_num,
"above_median_num": above_median_num,
"get_medal_num": get_medal_num,
"bronze_num": bronze_num,
"silver_num": silver_num,
"gold_num": gold_num,
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"test_scores": test_scores,
# "test_ranks": test_ranks,
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"valid_scores": valid_scores,
"success_loop_num": success_loop_num,
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"sota_exp_stat": sota_exp_stat,
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"sota_exp_score": sota_exp_score,
# "sota_exp_rank": sota_exp_rank,
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"bronze_threshold": bronze_threshold,
"silver_threshold": silver_threshold,
"gold_threshold": gold_threshold,
"median_threshold": median_threshold,
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}
)
# Save the summary
save_name = f"summary_{hours}h.pkl" if hours else "summary.pkl"
save_p = log_folder / save_name
if save_p.exists():
save_p.unlink()
print(f"Old {save_name} removed.")
pd.to_pickle(stat, save_p)
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# {
# "competition_id": "stanford-covid-vaccine",
# "score": null,
# "gold_threshold": 0.34728,
# "silver_threshold": 0.35175,
# "bronze_threshold": 0.3534,
# "median_threshold": 0.363095,
# "any_medal": false,
# "gold_medal": false,
# "silver_medal": false,
# "bronze_medal": false,
# "above_median": false,
# "submission_exists": true,
# "valid_submission": false,
# "is_lower_better": true,
# "created_at": "2025-01-21T11:59:33.788201",
# "submission_path": "submission.csv"
# }
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def grade_summary(log_folder: str) -> None:
"""
Generate test scores for log traces in the log folder and save the summary.
"""
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log_folder = Path(log_folder)
save_all_grade_info(log_folder)
summarize_folder(log_folder)
if __name__ == "__main__":
fire.Fire(
{
"grade": save_all_grade_info,
"summary": summarize_folder,
"grade_summary": grade_summary,
}
)