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NexQuant/rdagent/log/ui/ds_summary.py
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import math
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import pickle
import re
from collections import deque
from datetime import datetime, timedelta
from pathlib import Path
import pandas as pd
import plotly.express as px
import plotly.graph_objects as go
import streamlit as st
from streamlit import session_state as state
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from rdagent.log.mle_summary import extract_mle_json
from rdagent.log.ui.conf import UI_SETTING
from rdagent.log.ui.ds_trace import load_times
from rdagent.log.ui.utils import ALL, HIGH, LITE, MEDIUM
from rdagent.scenarios.kaggle.kaggle_crawler import leaderboard_scores
def get_metric_direction(competition: str):
leaderboard = leaderboard_scores(competition)
return float(leaderboard[0]) > float(leaderboard[-1])
def get_script_time(stdout_p: Path):
with stdout_p.open("r") as f:
first_line = next(f).strip()
last_line = deque(f, maxlen=1).pop().strip()
# Extract timestamps from the lines
first_time_match = re.search(r"(\d{4}-\d{2}-\d{2} \d{2}:\d{2}:\d{2}\+\d{2}:\d{2})", first_line)
last_time_match = re.search(r"(\d{4}-\d{2}-\d{2} \d{2}:\d{2}:\d{2}\+\d{2}:\d{2})", last_line)
if first_time_match and last_time_match:
first_time = datetime.fromisoformat(first_time_match.group(1))
last_time = datetime.fromisoformat(last_time_match.group(1))
return pd.Timedelta(last_time - first_time)
return None
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@st.cache_data(persist=True)
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def get_final_sota_exp(log_path: Path):
sota_exp_paths = [i for i in log_path.rglob(f"**/SOTA experiment/**/*.pkl")]
if len(sota_exp_paths) == 0:
return None
final_sota_exp_path = max(sota_exp_paths, key=lambda x: int(re.match(r".*Loop_(\d+).*", str(x))[1]))
with final_sota_exp_path.open("rb") as f:
final_sota_exp = pickle.load(f)
return final_sota_exp
@st.cache_data(persist=True)
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def get_sota_exp_stat(log_path: Path):
trace_paths = [i for i in log_path.rglob(f"**/trace/**/*.pkl")]
if len(trace_paths) == 0:
return None
final_trace_path = max(trace_paths, key=lambda x: int(re.match(r".*Loop_(\d+).*", str(x))[1]))
with final_trace_path.open("rb") as f:
final_trace = pickle.load(f)
if hasattr(final_trace, "sota_exp_to_submit"):
st.toast("Using sota_exp_to_submit")
sota_exp = final_trace.sota_exp_to_submit
else:
sota_exp = final_trace.sota_experiment()
if sota_exp is None:
return None
sota_loop_id = None
for i, ef in enumerate(final_trace.hist):
if ef[0] == sota_exp:
sota_loop_id = i
break
sota_mle_score_paths = [i for i in log_path.rglob(f"Loop_{sota_loop_id}/running/mle_score/**/*.pkl")]
if len(sota_mle_score_paths) == 0:
# sota exp is not evaluated by mle_score
return None
with sota_mle_score_paths[0].open("rb") as f:
sota_mle_score = extract_mle_json(pickle.load(f))
sota_exp_stat = None
if sota_mle_score: # sota exp's grade output
if sota_mle_score["gold_medal"]:
sota_exp_stat = "gold"
elif sota_mle_score["silver_medal"]:
sota_exp_stat = "silver"
elif sota_mle_score["bronze_medal"]:
sota_exp_stat = "bronze"
elif sota_mle_score["above_median"]:
sota_exp_stat = "above_median"
elif sota_mle_score["valid_submission"]:
sota_exp_stat = "valid_submission"
elif sota_mle_score["submission_exists"]:
sota_exp_stat = "made_submission"
return sota_exp_stat
@st.cache_data(persist=True)
def get_summary_df(log_folders: list[str]) -> tuple[dict, pd.DataFrame]:
summarys = {}
sn = "summary.pkl"
for lf in log_folders:
if (Path(lf) / sn).exists():
summarys[lf] = pd.read_pickle(Path(lf) / sn)
if len(summarys) == 0:
return {}, pd.DataFrame()
summary = {}
for lf, s in summarys.items():
for k, v in s.items():
stdout_p = Path(lf) / f"{k}.stdout"
if stdout_p.exists():
v["script_time"] = get_script_time(stdout_p)
else:
v["script_time"] = None
exp_gen_time = timedelta()
coding_time = timedelta()
running_time = timedelta()
all_time = timedelta()
times_info = load_times(Path(lf) / k)
for time_info in times_info.values():
all_time += sum((ti.end - ti.start for ti in time_info), timedelta())
exp_gen_time += time_info[0].end - time_info[0].start
if len(time_info) > 1:
coding_time += time_info[1].end - time_info[1].start
if len(time_info) > 2:
running_time += time_info[2].end - time_info[2].start
v["exec_time"] = str(all_time).split(".")[0]
v["exp_gen_time"] = str(exp_gen_time).split(".")[0]
v["coding_time"] = str(coding_time).split(".")[0]
v["running_time"] = str(running_time).split(".")[0]
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final_sota_exp = get_final_sota_exp(Path(lf) / k)
if final_sota_exp is not None and final_sota_exp.result is not None:
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v["sota_exp_score_valid"] = final_sota_exp.result.loc["ensemble"].iloc[0]
else:
v["sota_exp_score_valid"] = None
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v["sota_exp_stat_new"] = get_sota_exp_stat(Path(lf) / k)
# 调整实验名字
if "amlt" in lf:
summary[f"{lf[lf.rfind('amlt')+5:].split('/')[0]} - {k}"] = v
elif "ep" in lf:
summary[f"{lf[lf.rfind('ep'):]} - {k}"] = v
else:
summary[f"{lf} - {k}"] = v
summary = {k: v for k, v in summary.items() if "competition" in v}
base_df = pd.DataFrame(
columns=[
"Competition",
"Script Time",
"Exec Time",
"Exp Gen",
"Coding",
"Running",
"Total Loops",
"Successful Final Decision",
"Made Submission",
"Valid Submission",
"V/M",
"Above Median",
"Bronze",
"Silver",
"Gold",
"Any Medal",
"Best Result",
"SOTA Exp",
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"SOTA Exp (_to_submit)",
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"SOTA Exp Score (valid)",
"SOTA Exp Score",
"Baseline Score",
"Ours - Base",
"Ours vs Base",
"Ours vs Bronze",
"Ours vs Silver",
"Ours vs Gold",
"Bronze Threshold",
"Silver Threshold",
"Gold Threshold",
"Medium Threshold",
],
index=summary.keys(),
)
# Read baseline results
baseline_result_path = UI_SETTING.baseline_result_path
if Path(baseline_result_path).exists():
baseline_df = pd.read_csv(baseline_result_path)
def compare_score(s1, s2):
if s1 is None or s2 is None:
return None
try:
c_value = math.exp(abs(math.log(s1 / s2)))
except Exception as e:
c_value = None
return c_value
for k, v in summary.items():
loop_num = v["loop_num"]
base_df.loc[k, "Competition"] = v["competition"]
base_df.loc[k, "Script Time"] = v["script_time"]
base_df.loc[k, "Exec Time"] = v["exec_time"]
base_df.loc[k, "Exp Gen"] = v["exp_gen_time"]
base_df.loc[k, "Coding"] = v["coding_time"]
base_df.loc[k, "Running"] = v["running_time"]
base_df.loc[k, "Total Loops"] = loop_num
if loop_num == 0:
base_df.loc[k] = "N/A"
else:
base_df.loc[k, "Successful Final Decision"] = v["success_loop_num"]
base_df.loc[k, "Made Submission"] = v["made_submission_num"]
if v["made_submission_num"] > 0:
base_df.loc[k, "Best Result"] = "made_submission"
base_df.loc[k, "Valid Submission"] = v["valid_submission_num"]
if v["valid_submission_num"] > 0:
base_df.loc[k, "Best Result"] = "valid_submission"
base_df.loc[k, "Above Median"] = v["above_median_num"]
if v["above_median_num"] > 0:
base_df.loc[k, "Best Result"] = "above_median"
base_df.loc[k, "Bronze"] = v["bronze_num"]
if v["bronze_num"] > 0:
base_df.loc[k, "Best Result"] = "bronze"
base_df.loc[k, "Silver"] = v["silver_num"]
if v["silver_num"] > 0:
base_df.loc[k, "Best Result"] = "silver"
base_df.loc[k, "Gold"] = v["gold_num"]
if v["gold_num"] > 0:
base_df.loc[k, "Best Result"] = "gold"
base_df.loc[k, "Any Medal"] = v["get_medal_num"]
baseline_score = None
if Path(baseline_result_path).exists():
baseline_score = baseline_df.loc[baseline_df["competition_id"] == v["competition"], "score"].item()
base_df.loc[k, "SOTA Exp"] = v.get("sota_exp_stat", None)
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base_df.loc[k, "SOTA Exp (_to_submit)"] = v["sota_exp_stat_new"]
if baseline_score is not None and v.get("sota_exp_score", None) is not None:
base_df.loc[k, "Ours - Base"] = v["sota_exp_score"] - baseline_score
base_df.loc[k, "Ours vs Base"] = compare_score(v["sota_exp_score"], baseline_score)
base_df.loc[k, "Ours vs Bronze"] = compare_score(v["sota_exp_score"], v.get("bronze_threshold", None))
base_df.loc[k, "Ours vs Silver"] = compare_score(v["sota_exp_score"], v.get("silver_threshold", None))
base_df.loc[k, "Ours vs Gold"] = compare_score(v["sota_exp_score"], v.get("gold_threshold", None))
base_df.loc[k, "SOTA Exp Score"] = v.get("sota_exp_score", None)
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base_df.loc[k, "SOTA Exp Score (valid)"] = v.get("sota_exp_score_valid", None)
base_df.loc[k, "Baseline Score"] = baseline_score
base_df.loc[k, "Bronze Threshold"] = v.get("bronze_threshold", None)
base_df.loc[k, "Silver Threshold"] = v.get("silver_threshold", None)
base_df.loc[k, "Gold Threshold"] = v.get("gold_threshold", None)
base_df.loc[k, "Medium Threshold"] = v.get("median_threshold", None)
base_df["SOTA Exp"] = base_df["SOTA Exp"].replace("", pd.NA)
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base_df["SOTA Exp Score (valid)"] = (
base_df["SOTA Exp Score (valid)"].replace("Not Calculated", 0).replace("Not Computed", 0)
)
base_df = base_df.astype(
{
"Total Loops": int,
"Successful Final Decision": int,
"Made Submission": int,
"Valid Submission": int,
"Above Median": int,
"Bronze": int,
"Silver": int,
"Gold": int,
"Any Medal": int,
"Ours - Base": float,
"Ours vs Base": float,
"SOTA Exp Score": float,
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"SOTA Exp Score (valid)": float,
"Baseline Score": float,
"Bronze Threshold": float,
"Silver Threshold": float,
"Gold Threshold": float,
"Medium Threshold": float,
}
)
return summary, base_df
def num2percent(num: int, total: int, show_origin=True) -> str:
num = int(num)
total = int(total)
if show_origin:
return f"{num} ({round(num / total * 100, 2)}%)"
return f"{round(num / total * 100, 2)}%"
def percent_df(df: pd.DataFrame, show_origin=True) -> pd.DataFrame:
base_df = df.copy(deep=True)
# Convert columns to object dtype so we can store strings like "14 (53.85%)" without warnings
columns_to_convert = [
"Successful Final Decision",
"Made Submission",
"Valid Submission",
"Above Median",
"Bronze",
"Silver",
"Gold",
"Any Medal",
]
base_df[columns_to_convert] = base_df[columns_to_convert].astype(object)
for k in base_df.index:
loop_num = int(base_df.loc[k, "Total Loops"])
if loop_num != 0:
base_df.loc[k, "Successful Final Decision"] = num2percent(
base_df.loc[k, "Successful Final Decision"], loop_num, show_origin
)
if base_df.loc[k, "Made Submission"] != 0:
base_df.loc[k, "V/M"] = (
f"{round(base_df.loc[k, 'Valid Submission'] / base_df.loc[k, 'Made Submission'] * 100, 2)}%"
)
else:
base_df.loc[k, "V/M"] = "N/A"
base_df.loc[k, "Made Submission"] = num2percent(base_df.loc[k, "Made Submission"], loop_num, show_origin)
base_df.loc[k, "Valid Submission"] = num2percent(base_df.loc[k, "Valid Submission"], loop_num, show_origin)
base_df.loc[k, "Above Median"] = num2percent(base_df.loc[k, "Above Median"], loop_num, show_origin)
base_df.loc[k, "Bronze"] = num2percent(base_df.loc[k, "Bronze"], loop_num, show_origin)
base_df.loc[k, "Silver"] = num2percent(base_df.loc[k, "Silver"], loop_num, show_origin)
base_df.loc[k, "Gold"] = num2percent(base_df.loc[k, "Gold"], loop_num, show_origin)
base_df.loc[k, "Any Medal"] = num2percent(base_df.loc[k, "Any Medal"], loop_num, show_origin)
return base_df
def days_summarize_win():
lfs1 = [re.sub(r"log\.srv\d*", "log.srv", folder) for folder in state.log_folders]
lfs2 = [re.sub(r"log\.srv\d*", "log.srv2", folder) for folder in state.log_folders]
lfs3 = [re.sub(r"log\.srv\d*", "log.srv3", folder) for folder in state.log_folders]
_, df1 = get_summary_df(lfs1)
_, df2 = get_summary_df(lfs2)
_, df3 = get_summary_df(lfs3)
df = pd.concat([df1, df2, df3], axis=0)
def mean_func(x: pd.DataFrame):
numeric_cols = x.select_dtypes(include=["int", "float"]).mean()
string_cols = x.select_dtypes(include=["object"]).agg(lambda col: ", ".join(col.fillna("none").astype(str)))
return pd.concat([numeric_cols, string_cols], axis=0).reindex(x.columns).drop("Competition")
df = df.groupby("Competition").apply(mean_func)
if st.toggle("Show Percent", key="show_percent"):
st.dataframe(percent_df(df, show_origin=False))
else:
st.dataframe(df)
def all_summarize_win():
def shorten_folder_name(folder: str) -> str:
if "amlt" in folder:
return folder[folder.rfind("amlt") + 5 :].split("/")[0]
if "ep" in folder:
return folder[folder.rfind("ep") :]
return folder
selected_folders = st.multiselect(
"Show these folders", state.log_folders, state.log_folders, format_func=shorten_folder_name
)
for lf in selected_folders:
if not (Path(lf) / "summary.pkl").exists():
st.warning(
f"summary.pkl not found in **{lf}**\n\nRun:`dotenv run -- python rdagent/log/mle_summary.py grade_summary --log_folder={lf} --hours=<>`"
)
summary, base_df = get_summary_df(selected_folders)
if not summary:
return
base_df = percent_df(base_df)
base_df.insert(0, "Select", True)
bt1, bt2 = st.columns(2)
select_lite_level = bt2.selectbox(
"Select MLE-Bench Competitions Level",
options=["ALL", "HIGH", "MEDIUM", "LITE"],
index=0,
key="select_lite_level",
)
if select_lite_level != "ALL":
if select_lite_level == "HIGH":
lite_set = set(HIGH)
elif select_lite_level == "MEDIUM":
lite_set = set(MEDIUM)
elif select_lite_level == "LITE":
lite_set = set(LITE)
else:
lite_set = set()
base_df["Select"] = base_df["Competition"].isin(lite_set)
else:
base_df["Select"] = True # select all if ALL is chosen
if bt1.toggle("Select Best", key="select_best"):
def apply_func(cdf: pd.DataFrame):
cp = cdf["Competition"].values[0]
md = get_metric_direction(cp)
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# If SOTA Exp Score (valid) column is empty, return the first index
if cdf["SOTA Exp Score (valid)"].dropna().empty:
return cdf.index[0]
if md:
best_idx = cdf["SOTA Exp Score (valid)"].idxmax()
else:
best_idx = cdf["SOTA Exp Score (valid)"].idxmin()
return best_idx
best_idxs = base_df.groupby("Competition").apply(apply_func)
base_df["Select"] = base_df.index.isin(best_idxs.values)
base_df = st.data_editor(
base_df.style.apply(
lambda col: col.map(lambda val: "background-color: #F0F8FF"),
subset=["Baseline Score", "Bronze Threshold", "Silver Threshold", "Gold Threshold", "Medium Threshold"],
axis=0,
)
.apply(
lambda col: col.map(lambda val: "background-color: #FFFFE0"),
subset=[
"Ours - Base",
"Ours vs Base",
"Ours vs Bronze",
"Ours vs Silver",
"Ours vs Gold",
],
axis=0,
)
.apply(
lambda col: col.map(lambda val: "background-color: #E6E6FA"),
subset=[
"Script Time",
"Exec Time",
"Exp Gen",
"Coding",
"Running",
],
axis=0,
)
.apply(
lambda col: col.map(lambda val: "background-color: #F0FFF0"),
subset=[
"Best Result",
"SOTA Exp",
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"SOTA Exp (_to_submit)",
"SOTA Exp Score",
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"SOTA Exp Score (valid)",
],
axis=0,
),
column_config={
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"Select": st.column_config.CheckboxColumn("Select", help="Stat this trace.", disabled=False),
},
disabled=(col for col in base_df.columns if col not in ["Select"]),
)
st.markdown("Ours vs Base: `math.exp(abs(math.log(sota_exp_score / baseline_score)))`")
# 统计选择的比赛
base_df = base_df[base_df["Select"]]
st.markdown(f"**统计的比赛数目: :red[{base_df.shape[0]}]**")
total_stat = (
base_df[
[
"Made Submission",
"Valid Submission",
"Above Median",
"Bronze",
"Silver",
"Gold",
"Any Medal",
]
]
!= "0 (0.0%)"
).sum()
total_stat.name = "总体统计(%)"
total_stat.loc["Bronze"] = base_df["Best Result"].value_counts().get("bronze", 0)
total_stat.loc["Silver"] = base_df["Best Result"].value_counts().get("silver", 0)
total_stat.loc["Gold"] = base_df["Best Result"].value_counts().get("gold", 0)
total_stat = total_stat / base_df.shape[0] * 100
# SOTA Exp 统计
se_counts = base_df["SOTA Exp"].value_counts(dropna=True)
se_counts.loc["made_submission"] = se_counts.sum()
se_counts.loc["Any Medal"] = se_counts.get("gold", 0) + se_counts.get("silver", 0) + se_counts.get("bronze", 0)
se_counts.loc["above_median"] = se_counts.get("above_median", 0) + se_counts.get("Any Medal", 0)
se_counts.loc["valid_submission"] = se_counts.get("valid_submission", 0) + se_counts.get("above_median", 0)
sota_exp_stat = pd.Series(index=total_stat.index, dtype=int, name="SOTA Exp 统计(%)")
sota_exp_stat.loc["Made Submission"] = se_counts.get("made_submission", 0)
sota_exp_stat.loc["Valid Submission"] = se_counts.get("valid_submission", 0)
sota_exp_stat.loc["Above Median"] = se_counts.get("above_median", 0)
sota_exp_stat.loc["Bronze"] = se_counts.get("bronze", 0)
sota_exp_stat.loc["Silver"] = se_counts.get("silver", 0)
sota_exp_stat.loc["Gold"] = se_counts.get("gold", 0)
sota_exp_stat.loc["Any Medal"] = se_counts.get("Any Medal", 0)
sota_exp_stat = sota_exp_stat / base_df.shape[0] * 100
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# SOTA Exp (trace.sota_exp_to_submit) 统计
se_counts_new = base_df["SOTA Exp (_to_submit)"].value_counts(dropna=True)
se_counts_new.loc["made_submission"] = se_counts_new.sum()
se_counts_new.loc["Any Medal"] = (
se_counts_new.get("gold", 0) + se_counts_new.get("silver", 0) + se_counts_new.get("bronze", 0)
)
se_counts_new.loc["above_median"] = se_counts_new.get("above_median", 0) + se_counts_new.get("Any Medal", 0)
se_counts_new.loc["valid_submission"] = se_counts_new.get("valid_submission", 0) + se_counts_new.get(
"above_median", 0
)
sota_exp_stat_new = pd.Series(index=total_stat.index, dtype=int, name="SOTA Exp (_to_submit) 统计(%)")
sota_exp_stat_new.loc["Made Submission"] = se_counts_new.get("made_submission", 0)
sota_exp_stat_new.loc["Valid Submission"] = se_counts_new.get("valid_submission", 0)
sota_exp_stat_new.loc["Above Median"] = se_counts_new.get("above_median", 0)
sota_exp_stat_new.loc["Bronze"] = se_counts_new.get("bronze", 0)
sota_exp_stat_new.loc["Silver"] = se_counts_new.get("silver", 0)
sota_exp_stat_new.loc["Gold"] = se_counts_new.get("gold", 0)
sota_exp_stat_new.loc["Any Medal"] = se_counts_new.get("Any Medal", 0)
sota_exp_stat_new = sota_exp_stat_new / base_df.shape[0] * 100
stat_df = pd.concat([total_stat, sota_exp_stat, sota_exp_stat_new], axis=1)
stat_t0, stat_t1 = st.columns(2)
with stat_t0:
st.dataframe(stat_df.round(2))
markdown_table = f"""
| xxx | {stat_df.iloc[0,1]:.1f} | {stat_df.iloc[1,1]:.1f} | {stat_df.iloc[2,1]:.1f} | {stat_df.iloc[3,1]:.1f} | {stat_df.iloc[4,1]:.1f} | {stat_df.iloc[5,1]:.1f} | {stat_df.iloc[6,1]:.1f} |
"""
st.text(markdown_table)
with stat_t1:
Loop_counts = base_df["Total Loops"]
fig = px.histogram(Loop_counts, nbins=10, title="Total Loops Histogram (nbins=10)")
mean_value = Loop_counts.mean()
median_value = Loop_counts.median()
fig.add_vline(
x=mean_value, line_color="orange", annotation_text="Mean", annotation_position="top right", line_width=3
)
fig.add_vline(
x=median_value, line_color="red", annotation_text="Median", annotation_position="top right", line_width=3
)
st.plotly_chart(fig)
# write curve
st.subheader("Curves", divider="rainbow")
if st.toggle("Show Curves", key="show_curves"):
for k, v in summary.items():
with st.container(border=True):
st.markdown(f"**:blue[{k}] - :violet[{v['competition']}]**")
try:
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tscores = {f"loop {k-1}": v for k, v in v["test_scores"].items()}
vscores = {}
for k, vs in v["valid_scores"].items():
if not vs.index.is_unique:
st.warning(
f"Loop {k}'s valid scores index are not unique, only the last one will be kept to show."
)
st.write(vs)
vscores[k] = vs[~vs.index.duplicated(keep="last")].iloc[:, 0]
if len(vscores) > 0:
metric_name = list(vscores.values())[0].name
else:
metric_name = "None"
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tdf = pd.Series(tscores, name="score")
vdf = pd.DataFrame(vscores)
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if "ensemble" in vdf.index:
ensemble_row = vdf.loc[["ensemble"]]
vdf = pd.concat([ensemble_row, vdf.drop("ensemble")])
vdf.columns = [f"loop {i}" for i in vdf.columns]
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fig = go.Figure()
# Add test scores trace from tdf
fig.add_trace(
go.Scatter(
x=tdf.index,
y=tdf,
mode="lines+markers",
name="Test scores",
marker=dict(symbol="diamond"),
line=dict(shape="linear", dash="dash"),
)
)
# Add valid score traces from vdf (transposed to have loops on x-axis)
for column in vdf.T.columns:
fig.add_trace(
go.Scatter(
x=vdf.T.index,
y=vdf.T[column],
mode="lines+markers",
name=f"{column}",
visible=("legendonly" if column != "ensemble" else None),
)
)
fig.update_layout(title=f"Test and Valid scores (metric: {metric_name})")
st.plotly_chart(fig)
except Exception as e:
import traceback
st.markdown("- Error: " + str(e))
st.code(traceback.format_exc())
st.markdown("- Valid Scores: ")
# st.write({k: type(v) for k, v in v["valid_scores"].items()})
st.json(v["valid_scores"])
with st.container(border=True):
if st.toggle("近3天平均", key="show_3days"):
days_summarize_win()
with st.container(border=True):
all_summarize_win()